Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_K03
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93380-2|CAB07596.1|  340|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z93380-3|CAB07600.1|  339|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z93380-1|CAB07598.2|  337|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z81587-1|CAB04701.1|  340|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U80842-4|AAB37950.3|  322|Caenorhabditis elegans Serpentine rece...    29   2.1  
AF040643-8|AAQ65203.1|  180|Caenorhabditis elegans Hypothetical ...    29   2.8  
U32305-1|AAK18854.2|  469|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AC024881-2|AAK71414.1|  274|Caenorhabditis elegans Serpentine re...    29   3.7  
Z93380-7|CAB07603.2|  335|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z82053-11|CAB04839.2|  335|Caenorhabditis elegans Hypothetical p...    28   6.5  
X59156-1|CAA41870.1|   77|Caenorhabditis elegans transposase pro...    28   6.5  
AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle...    28   6.5  
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so...    28   6.5  
Z81587-2|CAB04702.2|  339|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z93380-2|CAB07596.1|  340|Caenorhabditis elegans Hypothetical
           protein F28C12.2 protein.
          Length = 340

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 505 SKSACVGIVLAFSTIKVSPFGVN 573
           S+S C+ IVL FS I +S FG N
Sbjct: 244 SQSICISIVLQFSCIMISSFGSN 266


>Z93380-3|CAB07600.1|  339|Caenorhabditis elegans Hypothetical
           protein F28C12.4 protein.
          Length = 339

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +1

Query: 505 SKSACVGIVLAFSTIKVSPFGVN 573
           S+S C+ IVL F  I VS FGVN
Sbjct: 245 SQSVCILIVLQFVCISVSSFGVN 267


>Z93380-1|CAB07598.2|  337|Caenorhabditis elegans Hypothetical
           protein F28C12.1 protein.
          Length = 337

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +1

Query: 505 SKSACVGIVLAFSTIKVSPFGVN 573
           S+S C+ IVL F+ I +S FGVN
Sbjct: 243 SQSVCILIVLQFACIMLSSFGVN 265


>Z81587-1|CAB04701.1|  340|Caenorhabditis elegans Hypothetical
           protein T06G6.1 protein.
          Length = 340

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 505 SKSACVGIVLAFSTIKVSPFGVN 573
           S+S C+ IVL FS   +S FGVN
Sbjct: 245 SQSVCILIVLQFSCTMISSFGVN 267


>U80842-4|AAB37950.3|  322|Caenorhabditis elegans Serpentine
           receptor, class i protein53 protein.
          Length = 322

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -2

Query: 357 FIVKSKNIFMF*IINVLFQYIYIFFNPLEFYCFFNVF 247
           F++  +NI+M  I  +LF + +I F  + FY  F++F
Sbjct: 182 FVIYRRNIWMT-ISTILFIWAFIVFGSITFYTTFDMF 217


>AF040643-8|AAQ65203.1|  180|Caenorhabditis elegans Hypothetical
           protein F14D2.14 protein.
          Length = 180

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 246 LCTFCFEQNII*YQVTM*SR-QVNTLSREVLAKRCCRNTIIGTW 118
           L   CF+  ++ +Q     R + + L++++L K+CCR+     W
Sbjct: 88  LVNSCFKDRVVNFQDHQGLRLRTDNLAKQILVKKCCRDDFEFEW 131


>U32305-1|AAK18854.2|  469|Caenorhabditis elegans Hypothetical
           protein B0336.6 protein.
          Length = 469

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -3

Query: 584 YSAPFTPNGLTLIVLNARTIPTQADLDKTVSGIPNLSGRTDYGVFCG 444
           +  P  PN L L  +++R +PTQ D+D       ++ G + YGVF G
Sbjct: 344 HDLPPPPNSL-LTGMSSR-MPTQDDMDDLPPPPESVGGSSAYGVFAG 388


>AC024881-2|AAK71414.1|  274|Caenorhabditis elegans Serpentine
           receptor, class sx protein7 protein.
          Length = 274

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 98  GVINGCCQVPMIVFRQHLLASTSRLSVFTCLDHIV 202
           G    CC + +I   Q L + +S L  F CL  I+
Sbjct: 25  GTFGNCCFIALIFKNQRLRSKSSYLQCFQCLFQII 59


>Z93380-7|CAB07603.2|  335|Caenorhabditis elegans Hypothetical
           protein T26E3.9 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 505 SKSACVGIVLAFSTIKVSPFGVN 573
           S+S C+ IVL F+ I +S +GVN
Sbjct: 241 SQSVCILIVLQFACILMSSYGVN 263


>Z82053-11|CAB04839.2|  335|Caenorhabditis elegans Hypothetical
           protein T26E3.9 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 505 SKSACVGIVLAFSTIKVSPFGVN 573
           S+S C+ IVL F+ I +S +GVN
Sbjct: 241 SQSVCILIVLQFACILMSSYGVN 263


>X59156-1|CAA41870.1|   77|Caenorhabditis elegans transposase
           protein.
          Length = 77

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -2

Query: 375 LNETHVFIVKSKNIFMF*IINVLFQYIYIFFNPLEFYCFFNVFL 244
           L E H F  +++  F    +N  FQ+I+ FFN   F  F+ VFL
Sbjct: 27  LIERHPFRCETRRCFSAYFLN-FFQFIFFFFN--IFQLFYVVFL 67


>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine
           nucleotide exchange factorfor RAS protein.
          Length = 1413

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -3

Query: 596 YYVVYSAPFTPNGLTLIVLNARTIPTQADLDKTVSGIPNLSGRTDYGVFCGLQ*IS 429
           + + Y +  TPN L  ++L    IPT   L +   G   L+GR D     GL  IS
Sbjct: 686 FLISYRSFCTPNDLFSLLLERFNIPTPKKLQQPKQGGGPLAGRYDTVQSHGLSAIS 741


>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
           homolog protein 1 protein.
          Length = 1493

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -3

Query: 596 YYVVYSAPFTPNGLTLIVLNARTIPTQADLDKTVSGIPNLSGRTDYGVFCGLQ*IS 429
           + + Y +  TPN L  ++L    IPT   L +   G   L+GR D     GL  IS
Sbjct: 686 FLISYRSFCTPNDLFSLLLERFNIPTPKKLQQPKQGGGPLAGRYDTVQSHGLSAIS 741


>Z81587-2|CAB04702.2|  339|Caenorhabditis elegans Hypothetical
           protein T06G6.2 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 505 SKSACVGIVLAFSTIKVSPFGVN 573
           S+S C+ IVL F+ I +S  GVN
Sbjct: 245 SQSVCILIVLQFACILISSLGVN 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,158,761
Number of Sequences: 27780
Number of extensions: 289539
Number of successful extensions: 647
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)