Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_J23
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    27   1.5  
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    27   1.9  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    26   4.5  
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...    25   5.9  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    25   5.9  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.9  
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa...    25   5.9  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   7.8  

>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 304  VQGLLSYPEICAKLINPDQNGKRPHLRKVNDP-NKRFGTYAFRLPDDNGEGGF 459
            V  L+SYP++  ++     +    +LR++N P N  F  +A   P    EG F
Sbjct: 1815 VNSLISYPKMNIEVSQSSSDKLLLYLRRLNQPLNPDFYIFAPLFPKPQSEGFF 1867


>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 301 WYKDQASPPSSACIGGTPEISLSESSFHVRPS 206
           WY  QA+ PS+  + GTP+++ +      RPS
Sbjct: 324 WY--QAADPSNGVVDGTPKLNSNTRGSSKRPS 353


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 168 VRLPTNLSLVSAPLGRTWKLDSDSEISGVPPI 263
           + L  NLS+ + PLGR  +    + + G+ P+
Sbjct: 122 ITLGGNLSIAAGPLGRNAEAGGGASVGGMAPM 153


>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 456 ATFTIIIRKAEGIGPKTFVRIVDLTKMRTLSVLVGVN 346
           A   +I+   EGI     +R+ D+ K ++ S LVG N
Sbjct: 120 AEVPLIVAITEGIPQHDMLRVSDILKTQSKSRLVGPN 156


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +3

Query: 9   WSTLSTSRAFDYLYTVNVTPKTADYTST 92
           W+  ST   F YL      PKT   T T
Sbjct: 342 WNLTSTPSVFHYLIKAQAEPKTTKVTLT 369


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 438 IRKAEGIGPKTFVRIVDLTKM 376
           IR   G GP+  ++ VD+TK+
Sbjct: 39  IRSVHGTGPRLSIKYVDVTKL 59


>SPBC25B2.04c |||mitochondrial ribosome assembly
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 313 NLELWYKDQASPPSSACIGGTPEIS 239
           N+E W+K+ ++P  SA I  TP +S
Sbjct: 98  NVECWFKETSTPEKSAFI--TPYVS 120


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 328 EICAKLINPDQNGKRPHLRKVNDPNKRFGTYAFRLP 435
           E C K +  +    R HL ++   N+RF   + R+P
Sbjct: 812 ETCDKQVQLEDTRYRQHLSELESLNQRFTEISERIP 847


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,547,315
Number of Sequences: 5004
Number of extensions: 53852
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)