Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_J23
         (569 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0491 - 16519274-16519552,16519945-16520195,16520317-165204...    32   0.37 
09_04_0666 + 19318512-19318578,19319185-19319273,19321344-193221...    29   2.6  
08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,443...    28   4.6  
04_03_0265 - 13638816-13641348,13641432-13641490                       28   4.6  
03_01_0434 + 3362173-3362520,3362633-3363208                           28   4.6  
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852...    28   4.6  
05_03_0488 - 14651532-14652265,14652404-14653988                       27   8.0  
03_02_0930 - 12480983-12481888                                         27   8.0  

>04_03_0491 -
           16519274-16519552,16519945-16520195,16520317-16520408,
           16520409-16520605,16521462-16521501,16522915-16522994
          Length = 312

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 10/27 (37%), Positives = 22/27 (81%)
 Frame = +3

Query: 174 LPTNLSLVSAPLGRTWKLDSDSEISGV 254
           L +N++++ +PLG++W+++ D + SGV
Sbjct: 56  LNSNMAIILSPLGKSWRVELDKDQSGV 82


>09_04_0666 +
           19318512-19318578,19319185-19319273,19321344-19322171,
           19322264-19322419,19322507-19322881
          Length = 504

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 205 HLDVRGSSIQTVKFPEFHRYTPMRVVKLGPYTKVQGLL 318
           H+ + G S+Q  + PE HR+  ++ VK+  +   + L+
Sbjct: 388 HVSIFGDSLQLRQMPEHHRHGNLQSVKITGFCSAKSLI 425


>08_01_0509 +
           4433837-4434437,4434564-4434636,4435408-4437367,
           4437721-4437990,4438168-4438605,4438772-4439043,
           4439126-4439274,4439339-4439470,4439554-4439880,
           4439963-4440357,4440551-4440861,4441304-4441394,
           4441806-4441847
          Length = 1686

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 340 WRKFLGSLINLELWYKDQASPPSSACIGGTPEISLSE 230
           W  +LGSL  L+LW + +  P     +G  P +   E
Sbjct: 707 WMSYLGSLTELQLWIR-RMGPNDVKILGAIPSLHFLE 742


>04_03_0265 - 13638816-13641348,13641432-13641490
          Length = 863

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +3

Query: 54  VNVTPKTADYTSTVFTHRDNRDPLQXXXXXL*ITGFKMVRLPTNLSLVSAPLGRTWKLDS 233
           V  TP    Y+ +V T++  +DP +       ++ F     P+N+SL  A   +  +L+ 
Sbjct: 254 VESTPPQLYYSHSVNTNKSGKDPTKVTFTNGSLSIFVQSTQPSNISLPQASSTQYMRLEF 313

Query: 234 DSEI 245
           D  +
Sbjct: 314 DGHL 317


>03_01_0434 + 3362173-3362520,3362633-3363208
          Length = 307

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 295 KDQASPPSSACIGGTPEISLSESSFHVRPSGA 200
           KD++S PSS C+ G     L +     RP+GA
Sbjct: 49  KDESSEPSSVCLDGMVRSFLEDGVGVERPAGA 80


>02_03_0074 +
           14781763-14784191,14784888-14784978,14785180-14785230,
           14785882-14785947,14786509-14786610
          Length = 912

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 469 KKPRSHLHHYHQEGGRHR 416
           ++P+SH HH+H  G R R
Sbjct: 164 QQPQSHHHHHHHSGSRKR 181


>05_03_0488 - 14651532-14652265,14652404-14653988
          Length = 772

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
 Frame = +1

Query: 94  YLRT-AITAILYKDADADYKLLDSKWCAYPQTCPWYQHHLDVRGSSIQTVKFPEFHRYTP 270
           YL T A   I+++D  +   LLD KW A        +   D   + + TV    F    P
Sbjct: 557 YLHTGAKQTIIHRDVKSTNILLDGKWVAKVSDFGLSKVSTDKDKTYVSTVVKGSFGYLDP 616

Query: 271 --MRVVKLGPYTKV--QGLLSYPEICAK-LINPDQNGKRPHLR 384
              R  KL   + V   G+L +  +CA+ +INP+   ++  LR
Sbjct: 617 EYFRRQKLTKKSDVFSFGVLLFEVLCARPVINPELPEEQVSLR 659


>03_02_0930 - 12480983-12481888
          Length = 301

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 295 KDQASPPSSACIGGTPEISLSESSFHVRPSGADTKDKFVG 176
           K++AS  SS     TP  S     FHVRP+ A  + + VG
Sbjct: 143 KNEASDSSSTSAATTP--STRARGFHVRPTAASRRLRRVG 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,260,123
Number of Sequences: 37544
Number of extensions: 380220
Number of successful extensions: 985
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)