Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_J23
         (569 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.70 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   1.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   3.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   3.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   3.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.9  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   6.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 465  NPEATFTIIIRKAEGIGPKTFVRIVDLTKMRTLSV 361
            +P  T TII  +    GP T +R+ DL +  TL V
Sbjct: 962  DPSDTVTIITAEEAPSGPPTSIRVDDLDQ-HTLKV 995


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 146 INYWIQNGAPTHKLVLGISTTWT 214
           +++WI + A + ++ LGI+T  T
Sbjct: 261 VSFWINHEATSARVALGITTVLT 283


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +2

Query: 146 INYWIQNGAPTHKLVLGISTTWTYV 220
           +++W+   A   ++VLG +T  T++
Sbjct: 251 VSFWLHMDASPPRIVLGTNTILTFM 275


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 146 INYWIQNGAPTHKLVLGISTTWT 214
           +++WI   A + ++ LGI+T  T
Sbjct: 264 VSFWIHREATSDRVGLGITTVLT 286


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = +2

Query: 146 INYWIQNGAPTHKLVLGISTTWT 214
           +++W+   A   ++ LG++T  T
Sbjct: 240 VSFWLNRNATPARVALGVTTVLT 262


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = +2

Query: 146 INYWIQNGAPTHKLVLGISTTWT 214
           +++W+   A   ++ LG++T  T
Sbjct: 240 VSFWLNRNATPARVALGVTTVLT 262


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = +2

Query: 146 INYWIQNGAPTHKLVLGISTTWT 214
           +++W+   A   ++ LG++T  T
Sbjct: 179 VSFWLNRNATPARVALGVTTVLT 201


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
 Frame = +1

Query: 337 AKLINPDQ---NGKRPHLRKVNDPNK 405
           A++  PD    NGK  +L  +  PNK
Sbjct: 83  ARIWKPDTYFYNGKHSYLHTITSPNK 108



 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +2

Query: 146 INYWIQNGAPTHKLVLGISTTWT 214
           +++W+   A   ++ LGI+T  T
Sbjct: 233 VSFWLNREATADRVSLGITTVLT 255


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 207 LGRTWKLDSDSEISGVPPIHADEGGEAWSLYQ 302
           L  T K  S  ++   PP+HAD+  E   + Q
Sbjct: 233 LSTTDKKGSAIDLDIGPPLHADQAEEYKKIQQ 264


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,086
Number of Sequences: 438
Number of extensions: 4033
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)