Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_J21
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    28   1.2  
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    26   3.7  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    26   3.7  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    26   4.9  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   4.9  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   6.5  
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    25   6.5  

>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 351 RRILQRSCRVGREGR*KCTEC--TDRTAFLSYCLC 253
           R+  +RSC V R G+  C E   TDR AF+S  LC
Sbjct: 22  RQECRRSCPVVRTGK-LCIEVNPTDRIAFISETLC 55


>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 199 NHCLW--AVNKLVCAALRSGAEAVGEESCAVGALGAFLAPLSP 321
           N C+W   V  ++C  L    EA      +VGA+ AF+A  +P
Sbjct: 383 NVCVWMNVVVGILCCLLIFAGEAAINAIFSVGAIAAFVAFTTP 425


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -2

Query: 311 GAKNAPSAPTAQLSSPTASAPLLRAAQTSLLTAQRQ*LPSRSQSIVLKSATALED 147
           G+KN   +   +  S T  +  LRA  T  LT  +  LPS + +   +S    ED
Sbjct: 122 GSKNGAKSAVKKEESDTDDSVPLRAVSTVSLTPYKSELPSGASTTQNRSPNDEED 176


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 148 SSSAVALLRTMDWEREGNHCLWAVNKLVCAALRSGAEAV 264
           SS+A++  R    E  G HC W     V AAL +GA+ V
Sbjct: 372 SSTAISHSRAFIVEVMGRHCGWLA---VLAALATGADFV 407


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 258 GSRRGKLCGRCTRCIFSAPLSPLYSCAEVCASPPRPC*EAFPSL 389
           GS R KL     R +  A   PL++ A     P R C  A  S+
Sbjct: 313 GSPRDKLVQEILRIVLEAIYEPLFNTASHGFRPGRSCHSALRSI 356


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +3

Query: 231 LCCPQKWCRGSRRGKLCGRCTRCIFSAPLSPLYSCAEVCASPPRP 365
           L C +  C+      LCG C   I +     L+S    C+S P P
Sbjct: 346 LPCGEHTCKKRCHSGLCGACFEPINAKCYCGLHSKTYPCSSLPSP 390


>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 9   YPSFEVIGNTEREVGTCYSRFFYWWTSH--VTVHRSSPSF 122
           YP+  +    +  V   Y+  F W+T+H  ++ H   PSF
Sbjct: 171 YPNAYIAAALQTVVQFSYTTVFGWYTTHLFLSTHSLFPSF 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,408,390
Number of Sequences: 5004
Number of extensions: 48431
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)