Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_J21
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1189 - 26804775-26804930,26805020-26805123,26805346-268056... 31 0.72
07_03_0274 - 16155728-16156180,16156542-16156958,16157044-16157520 30 1.7
05_06_0212 + 26410330-26410419,26410562-26410846,26411005-264112... 30 1.7
04_04_0169 + 23266110-23266439,23267208-23267288,23267399-232675... 30 1.7
01_01_0201 + 1746088-1747086,1748735-1748806,1750106-1750168,175... 29 3.8
09_03_0218 + 13539481-13540082,13540171-13540276,13540645-135409... 28 5.1
06_03_1122 - 27775141-27775333,27775414-27775604,27775907-277770... 28 5.1
03_02_0332 + 7559469-7560892,7563193-7563298,7563403-7563491,756... 28 5.1
11_04_0025 + 12382485-12382823,12382835-12382894,12382960-123830... 28 6.7
08_02_0160 - 13423033-13423050,13426060-13426721,13428417-13428663 28 6.7
08_01_0147 - 1166439-1166460,1166525-1167537 28 6.7
06_03_0178 + 17594062-17595576 28 6.7
06_03_0915 - 25929433-25930893 27 8.9
01_06_0599 - 30513858-30514079,30514157-30514588,30514683-30514823 27 8.9
>12_02_1189 -
26804775-26804930,26805020-26805123,26805346-26805610,
26805697-26805795,26806284-26806425,26806516-26806621,
26806718-26806785,26806870-26806929,26807292-26807566,
26807671-26807748,26808137-26808391,26809167-26809199,
26809312-26809444,26810060-26810202,26810249-26810327,
26810434-26810533,26811278-26811521,26811620-26811735,
26811845-26812004,26812347-26812574
Length = 947
Score = 31.1 bits (67), Expect = 0.72
Identities = 31/91 (34%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Frame = +1
Query: 166 LLRTMDWEREGNHCLWAVNKLVCAALRSGAEAVGEESCAVGALGAFLAPLSPHSTA--AL 339
LLR WE G+ + +N LV A + A + E S A L LA +S A AL
Sbjct: 604 LLRATAWEHYGSAPMVRMNSLVYATCFADAASSSELSLAYVKLIQHLATFKGYSAAFSAL 663
Query: 340 KYAPPLHDLARKLFHHLLRRGRL-EKALSLG 429
K A L+ LL+ L E+AL G
Sbjct: 664 KLAEEKFPLSANSHIQLLKMQLLHERALHRG 694
>07_03_0274 - 16155728-16156180,16156542-16156958,16157044-16157520
Length = 448
Score = 29.9 bits (64), Expect = 1.7
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = -2
Query: 320 GERGAKNAPSAPTAQLSSPTASAPLLRAAQTSLLTAQRQ*LPSRSQSIVLKSATALED-- 147
G GA+ PS TA L++PT + P +A + A R+ L + S+++V A +
Sbjct: 23 GLGGARLRPSRVTACLATPTPTPPPPTSAPLAPAAAARRELSAASRAVVEDEARYIVGTY 82
Query: 146 RLARIQAVKRRG*AMY 99
+R+ V RG +Y
Sbjct: 83 NRSRVVLVAGRGCKLY 98
>05_06_0212 +
26410330-26410419,26410562-26410846,26411005-26411208,
26411636-26411692,26411859-26412926
Length = 567
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 341 FSAAVEWGERGAKNAPSAPTAQLSSPTASAPL 246
FS E+ E G+KN+P+ P+ ++ +A A L
Sbjct: 470 FSTKTEYPENGSKNSPAVPSYMAATQSAKAKL 501
>04_04_0169 +
23266110-23266439,23267208-23267288,23267399-23267538,
23267815-23268070
Length = 268
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Frame = +1
Query: 196 GNHCLWAVNKLVCAALRSGAEAVGEESCAVGALGAFLAP--------LSPHSTAALKYAP 351
G H L+A++ + +GA G CAV A AFL P L+ ++ A
Sbjct: 5 GAHLLYALSGGAALSRLAGAARFGPHHCAVYAANAFLGPDLGSFAEWLASFLPSSSSAAA 64
Query: 352 PLHDLARKLFHH 387
+ DLA + HH
Sbjct: 65 AVGDLAMGVVHH 76
>01_01_0201 +
1746088-1747086,1748735-1748806,1750106-1750168,
1750355-1750489,1750604-1750669
Length = 444
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -2
Query: 308 AKNAPSAPTAQLSSPTASAPLLRAAQTSLLTAQRQ*LPSRSQSIVLKSATAL 153
A +A PTA SS T++AP + +S+L A + S + ++AT L
Sbjct: 178 ASSATPTPTASSSSSTSAAPFAHPSPSSVLEATKPAPKPESPPLPEQAATPL 229
>09_03_0218 + 13539481-13540082,13540171-13540276,13540645-13540960,
13541187-13541263,13541269-13541895,13542783-13543112,
13543442-13543747,13543824-13543896,13544004-13544089,
13544219-13544396,13545311-13545756
Length = 1048
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 320 GERGAKNAPSAPTAQLSSPTASAPLLRAAQTSLLTAQRQ*LPSRS 186
G RG + APT + A AP A T++L R LPS++
Sbjct: 982 GARGRASPTPAPTTLATLAPAVAPTTLAPATTMLPLPRSRLPSQA 1026
>06_03_1122 -
27775141-27775333,27775414-27775604,27775907-27777099,
27777206-27777353,27777534-27777609,27777696-27777818,
27777886-27778050,27778169-27778259,27778580-27778664,
27778745-27778900,27778992-27779048,27779138-27779236,
27779381-27779499,27780145-27780202
Length = 917
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -2
Query: 290 APTAQLSSPTASAPLLRAAQTSLLTAQRQ*LPSRSQSIVLKSATA 156
+P +QLSSP+ S+P+ QT L +Q Q P S S + S T+
Sbjct: 577 SPFSQLSSPSQSSPM--TLQTVLPFSQPQSYPDTSMSSLSPSNTS 619
>03_02_0332 +
7559469-7560892,7563193-7563298,7563403-7563491,
7563780-7563841,7564247-7564278
Length = 570
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = +1
Query: 130 WIRARRSSSAVALLRTMDWEREGNHCLWAVNKLVCAALRSGAEA---VGEESCAVGALGA 300
W+ R+SSA L + E E A +LV A+ E VGEE C + A A
Sbjct: 80 WVEVGRASSAEGKLECLPEEEEAP--AKAARELVLDAVLEEREEEGQVGEERCDLAAAVA 137
Query: 301 FLAPLSPH 324
+ + PH
Sbjct: 138 EVVGVKPH 145
>11_04_0025 +
12382485-12382823,12382835-12382894,12382960-12383073,
12383187-12383837
Length = 387
Score = 27.9 bits (59), Expect = 6.7
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = -2
Query: 305 KNAPSAPTAQLSSPTASAPLLRAAQTSLLTAQRQ*LPSRSQSIVLKSATALEDRLA 138
+ PSA + + + PT SAPLL+ SL+ SRS I LK T ++ +LA
Sbjct: 71 RKTPSA-SPKRTPPTPSAPLLKRKHLSLILFCNYFTHSRS-FINLKKKTVVKKKLA 124
>08_02_0160 - 13423033-13423050,13426060-13426721,13428417-13428663
Length = 308
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -2
Query: 302 NAPSA-PTAQLSSPTASAPLLRAAQ 231
NAPSA PTAQ+ PT +AP L Q
Sbjct: 278 NAPSAQPTAQVLVPTLAAPPLAPGQ 302
>08_01_0147 - 1166439-1166460,1166525-1167537
Length = 344
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 303 KCTECTDRTAFLSY 262
KCT CTDR +FL Y
Sbjct: 67 KCTFCTDRVSFLGY 80
>06_03_0178 + 17594062-17595576
Length = 504
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -2
Query: 296 PSAPTAQLSSPTASAPLLRAAQTSLLTAQRQ 204
PS+PT +S +ASA L AA T+ +++R+
Sbjct: 23 PSSPTPSSASASASASALAAAATTTTSSKRR 53
>06_03_0915 - 25929433-25930893
Length = 486
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 432 RSMRLGSVLRRALGRPSSITA 494
R++ G V+ +ALGRP+SI A
Sbjct: 133 RALSYGEVVHKALGRPASIVA 153
>01_06_0599 - 30513858-30514079,30514157-30514588,30514683-30514823
Length = 264
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +1
Query: 238 ALRSGAEAVGEESCAVGALGAFLA-PLSPHS---TAALKYAPPLHDLARKLF 381
++ G GEE+ AVG+ A LA P+ P + AA + HDL R F
Sbjct: 89 SVNGGRPLTGEETLAVGSYNALLASPILPGAGAYDAAAETFESSHDLFRAAF 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,477,528
Number of Sequences: 37544
Number of extensions: 404674
Number of successful extensions: 1192
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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