Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_J20
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 89 4e-19
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 89 4e-19
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 67 2e-12
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 67 2e-12
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 67 2e-12
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 42 1e-04
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 30 0.24
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 28 1.3
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 28 1.3
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 27 2.2
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S... 25 6.8
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 89.4 bits (212), Expect = 4e-19
Identities = 43/87 (49%), Positives = 56/87 (64%)
Frame = -2
Query: 533 RKN*TFNLLFPLPVGAKKRKKKNYSTPXXXXXXXXXXKLAVLRYYKVDENGKIHRLRREC 354
+K T +L+ L G KKRKKK Y+TP +LAVL+YYKV+++G + RLRREC
Sbjct: 62 QKESTLHLVLRLRGGGKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC 121
Query: 353 TGEQCGAGVFMAVMEDRHYCGKCHSTM 273
CGA FMA +DR YCG+CH T+
Sbjct: 122 --PNCGASTFMANHKDRLYCGRCHLTL 146
Score = 67.3 bits (157), Expect = 2e-12
Identities = 30/43 (69%), Positives = 36/43 (83%)
Frame = -1
Query: 627 QDKKGIPPDQQRLIFPGKQLEDGRTLSEYQIPEELNVQLIVPL 499
QDK+GIPPDQQRLIF GKQLEDGRTLS+Y I +E + L++ L
Sbjct: 31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 89.4 bits (212), Expect = 4e-19
Identities = 43/87 (49%), Positives = 56/87 (64%)
Frame = -2
Query: 533 RKN*TFNLLFPLPVGAKKRKKKNYSTPXXXXXXXXXXKLAVLRYYKVDENGKIHRLRREC 354
+K T +L+ L G KKRKKK Y+TP +LAVL+YYKV+++G + RLRREC
Sbjct: 62 QKESTLHLVLRLRGGGKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC 121
Query: 353 TGEQCGAGVFMAVMEDRHYCGKCHSTM 273
CGA FMA +DR YCG+CH T+
Sbjct: 122 --PNCGASTFMANHKDRLYCGRCHLTL 146
Score = 67.3 bits (157), Expect = 2e-12
Identities = 30/43 (69%), Positives = 36/43 (83%)
Frame = -1
Query: 627 QDKKGIPPDQQRLIFPGKQLEDGRTLSEYQIPEELNVQLIVPL 499
QDK+GIPPDQQRLIF GKQLEDGRTLS+Y I +E + L++ L
Sbjct: 31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 67.3 bits (157), Expect = 2e-12
Identities = 30/43 (69%), Positives = 36/43 (83%)
Frame = -1
Query: 627 QDKKGIPPDQQRLIFPGKQLEDGRTLSEYQIPEELNVQLIVPL 499
QDK+GIPPDQQRLIF GKQLEDGRTLS+Y I +E + L++ L
Sbjct: 31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 67.3 bits (157), Expect = 2e-12
Identities = 30/43 (69%), Positives = 36/43 (83%)
Frame = -1
Query: 627 QDKKGIPPDQQRLIFPGKQLEDGRTLSEYQIPEELNVQLIVPL 499
QDK+GIPPDQQRLIF GKQLEDGRTLS+Y I +E + L++ L
Sbjct: 31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 67.3 bits (157), Expect = 2e-12
Identities = 30/43 (69%), Positives = 36/43 (83%)
Frame = -1
Query: 627 QDKKGIPPDQQRLIFPGKQLEDGRTLSEYQIPEELNVQLIVPL 499
QDK+GIPPDQQRLIF GKQLEDGRTLS+Y I +E + L++ L
Sbjct: 31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73
Score = 67.3 bits (157), Expect = 2e-12
Identities = 30/43 (69%), Positives = 36/43 (83%)
Frame = -1
Query: 627 QDKKGIPPDQQRLIFPGKQLEDGRTLSEYQIPEELNVQLIVPL 499
QDK+GIPPDQQRLIF GKQLEDGRTLS+Y I +E + L++ L
Sbjct: 107 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 149
Score = 67.3 bits (157), Expect = 2e-12
Identities = 30/43 (69%), Positives = 36/43 (83%)
Frame = -1
Query: 627 QDKKGIPPDQQRLIFPGKQLEDGRTLSEYQIPEELNVQLIVPL 499
QDK+GIPPDQQRLIF GKQLEDGRTLS+Y I +E + L++ L
Sbjct: 183 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 225
Score = 67.3 bits (157), Expect = 2e-12
Identities = 30/43 (69%), Positives = 36/43 (83%)
Frame = -1
Query: 627 QDKKGIPPDQQRLIFPGKQLEDGRTLSEYQIPEELNVQLIVPL 499
QDK+GIPPDQQRLIF GKQLEDGRTLS+Y I +E + L++ L
Sbjct: 259 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 301
Score = 67.3 bits (157), Expect = 2e-12
Identities = 30/43 (69%), Positives = 36/43 (83%)
Frame = -1
Query: 627 QDKKGIPPDQQRLIFPGKQLEDGRTLSEYQIPEELNVQLIVPL 499
QDK+GIPPDQQRLIF GKQLEDGRTLS+Y I +E + L++ L
Sbjct: 335 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 377
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = -1
Query: 627 QDKKGIPPDQQRLIFPGKQLEDGRTLSEYQIPEELNVQLIVPL 499
++K+GIPP QQRLI+ GKQ+ D + Y + + L++ L
Sbjct: 31 EEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLAL 73
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 30.3 bits (65), Expect = 0.24
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = -1
Query: 612 IPPDQQRLIFPGKQLEDGRTLSEYQIPEELNVQLIVPLAR 493
I ++QRLI+ G+ L+D +L Y+I + ++ L+ L +
Sbjct: 39 IEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTLGQ 78
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +1
Query: 490 PTGKGNNKLNVQFFRDL--VFREGSTIFQLFTGEDQSLLIRRDAL 618
P G G L +Q R L + G +FT EDQ LIR AL
Sbjct: 94 PVGSGKTALLLQLCRLLGEKYSIGVVTNDIFTREDQEFLIRNKAL 138
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +3
Query: 558 DHLPTVYRGRSIFVDQEGCPSY 623
DHLP+V R RSI D G P Y
Sbjct: 611 DHLPSVKRRRSIANDFHGKPDY 632
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/50 (24%), Positives = 21/50 (42%)
Frame = -2
Query: 404 YYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDD 255
Y ++ +N + R C E F V++D H KC + ++ D
Sbjct: 228 YLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKCLAQLLINLSD 277
>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +3
Query: 15 LMSRSKVNSSTISKADVVVFKLYNLLCQILNKIYLLPL 128
L++R+ +NS T +++ ++ YN +++ K YL+ L
Sbjct: 154 LLARNPINSMTAAQSSLLNTMEYNKEQEVIRKKYLIGL 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,058,760
Number of Sequences: 5004
Number of extensions: 32588
Number of successful extensions: 98
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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