Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_J18
(605 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho... 115 5e-27
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 27 1.6
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 27 2.1
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 27 2.8
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 4.9
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ... 26 4.9
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 25 6.5
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 25 6.5
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 25 8.6
>SPAC1F12.02c |p23fy||translationally controlled tumor protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 115 bits (277), Expect = 5e-27
Identities = 67/149 (44%), Positives = 91/149 (61%), Gaps = 1/149 (0%)
Frame = +1
Query: 118 DNFYEVTGKTV-IRTQDDIHIDGFNPSAEEADEGTDSNVETGVDIVLNHRLVETYAFGDX 294
D YE + V ++ D+ I G NPSAE+A+E + ET ++V + RL T +F D
Sbjct: 25 DIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAEEGTETVNNLVYSFRLSPT-SF-DK 81
Query: 295 KSYTLYLKDYMKKLVAKLEEKAPDQVDIFKTNMNKVMKDILARFKDLQFFTGESMDCDGM 474
KSY Y+K YMK + A+L+E P++V +F+ N +K ILA FKD F+ GESMD D M
Sbjct: 82 KSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDAM 141
Query: 475 VAMMEYRNINGTDVPFMMFFKHGLDEEKF 561
V +M YR T P+M+FFK GL EKF
Sbjct: 142 VVLMNYREDGIT--PYMIFFKDGLVSEKF 168
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = -1
Query: 554 SSSRPCLKNIMNGTSVPLIFLYSIMATMPSQSMD 453
S+ + L+ ++NG S+P I ++ I MPS++ +
Sbjct: 34 SAMKTILRVVINGDSLPSILMHVIRFVMPSRNKE 67
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 241 VDIVLNHRLVETYAFGDXKSYTLYLKDYMKKLVAKLEEKAPDQVDIFKT 387
+D V ++L+E F + K T+YLK + L K + PD V+ T
Sbjct: 89 IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 145 TVIRTQDDIHIDGFNPSAEEADEGTDSNVE 234
T+ ++DDIH D ++ A+ DE SNVE
Sbjct: 50 TIDDSEDDIHYDDYD--ADAVDEEMPSNVE 77
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.8 bits (54), Expect = 4.9
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = -3
Query: 264 PVIQDYVYTSLHVGIRPFVSLLGRGVKSI--NVDIVLCSDHGLAGDFIKIVDQLTLYVSE 91
P++Q ++ S + GI + +KSI ++DI +C G++ DF+ D LT V++
Sbjct: 836 PLVQLFISPSRYAGIFDILC----NIKSIATSLDIHICL--GVSDDFVLCSDSLTTIVTD 889
Query: 90 TSRHQLY 70
+ +
Sbjct: 890 KDEKEKF 896
>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 597 SSFTYAVYAYALELLFIKTMFE 532
SSF Y ++ YA LLFI + F+
Sbjct: 317 SSFQYIIFHYAAGLLFINSDFK 338
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +1
Query: 151 IRTQDDIHIDGFNPSAEE-----ADEGTDSNVET-GVDIVLNHRLVE 273
+ +D + + F EE A E ++ +T +D+VL+HRL+E
Sbjct: 157 VNYNEDAYFESFEEEEEEEMYEYATEVSEEPEDTRAIDVVLDHRLIE 203
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = -1
Query: 275 VSTSL*FRTMSTPVSTLESVPSS-ASSAEGLNPSMW 171
V+T++ + + STPVST+ +P++ S GL +++
Sbjct: 981 VATTITYSSSSTPVSTVVVIPTAVCSGVRGLQYAVY 1016
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -1
Query: 242 TPVSTLESVPSSASSAEG 189
+P+S+LES+PS +S+ G
Sbjct: 151 SPISSLESLPSRSSTGSG 168
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,323
Number of Sequences: 5004
Number of extensions: 53608
Number of successful extensions: 162
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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