Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_J18
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...    95   5e-20
03_06_0724 - 35757228-35757323,35757837-35757893,35757983-357580...    32   0.41 
03_05_0278 - 22658137-22658352,22658440-22658576,22660230-22660305     29   3.8  
01_06_1638 + 38812226-38812660,38812989-38813063,38813180-388132...    29   3.8  
07_03_0808 - 21668100-21669092                                         27   8.7  

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score = 94.7 bits (225), Expect = 5e-20
 Identities = 60/146 (41%), Positives = 80/146 (54%), Gaps = 2/146 (1%)
 Frame = +1

Query: 127 YEVTGKTVIRTQDDIHIDGFNPSAEEA--DEGTDSNVETGVDIVLNHRLVETYAFGDXKS 300
           +EV GK V++   D+ I G NPSAE    DEG D      VDIV   RL E   F D K 
Sbjct: 29  WEVDGKWVVQGAIDVDI-GANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPPF-DKKQ 86

Query: 301 YTLYLKDYMKKLVAKLEEKAPDQVDIFKTNMNKVMKDILARFKDLQFFTGESMDCDGMVA 480
           +  ++K Y+K L AKL+ +  ++   FK N+    K +L + KDLQFF GESM  DG + 
Sbjct: 87  FVTFMKRYIKNLSAKLDAEKQEE---FKKNIEGATKYLLGKLKDLQFFVGESMHDDGGLV 143

Query: 481 MMEYRNINGTDVPFMMFFKHGLDEEK 558
              Y+  +G   P  ++F HGL E K
Sbjct: 144 FAYYK--DGATDPTFLYFSHGLKEVK 167


>03_06_0724 -
           35757228-35757323,35757837-35757893,35757983-35758075,
           35758271-35758336,35758444-35758653,35758750-35759022,
           35759112-35759251,35759330-35759471
          Length = 358

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
 Frame = +1

Query: 130 EVTGKTVIRTQDDIHIDGFNPSAEEADEGTDSNVETGVDIVLNHRLVETYAFGDXKSYTL 309
           + T  TV++  DD   DG    A+ +  G + ++   + ++   R  E     D K Y L
Sbjct: 140 QTTVGTVVKIADDEE-DGEGNGADGSSTGGNDDLFGLISVLNLGRYSEHRCMKDLKDYLL 198

Query: 310 YL---KDYMKKLVAKLEEKAPD 366
            +   KD  KKL   L +KAPD
Sbjct: 199 AVCGDKDTKKKLKQMLGDKAPD 220


>03_05_0278 - 22658137-22658352,22658440-22658576,22660230-22660305
          Length = 142

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 582 AVYAYALELLFIKTMFEEHHEWYIGTIDISV 490
           AVY Y LE  F+ T F  +HE ++   DI +
Sbjct: 17  AVYRYLLESGFVYTAFNFYHESHLDIHDIEI 47


>01_06_1638 +
           38812226-38812660,38812989-38813063,38813180-38813284,
           38813387-38813472,38813554-38813674,38813761-38813840,
           38814005-38814067,38814205-38814326,38814429-38814514,
           38814626-38814750,38814883-38814911,38815188-38815333,
           38815643-38815822,38816445-38816585
          Length = 597

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/66 (22%), Positives = 33/66 (50%)
 Frame = +1

Query: 19  FYYFKSPPIHQNDIYKDV*LVTRCLGYV*S*LIDNFYEVTGKTVIRTQDDIHIDGFNPSA 198
           F ++ +P +++N+I+ D  +     G++   +++  + V GK+   +   I  DG  PS 
Sbjct: 362 FSHYTAPELYRNEIF-DASVDAFSFGFILYEMVEGTHTVHGKSSEESGHTIRYDGMRPSL 420

Query: 199 EEADEG 216
           +    G
Sbjct: 421 KNKLRG 426


>07_03_0808 - 21668100-21669092
          Length = 330

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 298 ISXRQMHTFRLACDSGLCLHQ--SPRWNPSLRQPPRPR 191
           +S R  H ++    SGL LH   +PR  P  R+P RPR
Sbjct: 108 LSRRWRHVWKWV--SGLFLHHYPAPRLQPRARRPRRPR 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,123,928
Number of Sequences: 37544
Number of extensions: 331444
Number of successful extensions: 918
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)