Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_J17
(441 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 30 0.14
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 28 0.73
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 26 2.2
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 3.9
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual 25 5.2
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 5.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 6.8
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch... 25 6.8
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 24 9.0
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 24 9.0
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun... 24 9.0
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 30.3 bits (65), Expect = 0.14
Identities = 20/89 (22%), Positives = 40/89 (44%)
Frame = -3
Query: 406 AGGLRTSILGTAIRPVKAPAVAPSSSTLMNASWKTLDTFKELSTTIPRAASSNIFETPIY 227
+G + T++ G+ + V ++T +N + T+ T STT+ + + ET
Sbjct: 679 SGSVTTTLTGSGSNSIVTETVDVPTTTSVNYGYTTITTGWTGSTTLTSIVTHSGSETGPT 738
Query: 226 TVYIDL*KMFTLMYRNLYGIFNNTSTTIS 140
TVYI+ + G + +TT++
Sbjct: 739 TVYIETPSVSATTTTTTIGYSGSLTTTLT 767
Score = 24.2 bits (50), Expect = 9.0
Identities = 21/88 (23%), Positives = 37/88 (42%)
Frame = -3
Query: 403 GGLRTSILGTAIRPVKAPAVAPSSSTLMNASWKTLDTFKELSTTIPRAASSNIFETPIYT 224
G + T++ GT V ++T N + T+ T STT+ + ET T
Sbjct: 212 GSVTTTLTGTPSNGTVIDTVEVPTTT--NYGYTTITTGYTGSTTLTTTVPHSGNETGPTT 269
Query: 223 VYIDL*KMFTLMYRNLYGIFNNTSTTIS 140
VY++ T+ G + +TT++
Sbjct: 270 VYVETPYPTTVTTTTTVGYPGSVTTTLT 297
Score = 24.2 bits (50), Expect = 9.0
Identities = 20/80 (25%), Positives = 34/80 (42%)
Frame = -3
Query: 379 GTAIRPVKAPAVAPSSSTLMNASWKTLDTFKELSTTIPRAASSNIFETPIYTVYIDL*KM 200
GT I V+ P T + + T L+TT+P + + ET TVY++
Sbjct: 615 GTVIDTVEVPTTTNYGYTTVTTGYTGSTT---LTTTVPHSGN----ETGPTTVYVETPYP 667
Query: 199 FTLMYRNLYGIFNNTSTTIS 140
T+ G + +TT++
Sbjct: 668 TTVTTTTTVGYSGSVTTTLT 687
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 27.9 bits (59), Expect = 0.73
Identities = 13/57 (22%), Positives = 30/57 (52%)
Frame = +3
Query: 207 YKSIYTV*IGVSKIFDEAARGIVVDSSLKVSKVFQEAFIKVDEEGATAGAFTGLIAV 377
++++ T +G+SKI DE V+ SS + ++ ++ + + G+F L ++
Sbjct: 206 FETVNTFRLGLSKIVDEEFFSSVLSSSAQQLISLRDFYVSIKPDNPLTGSFFNLFSL 262
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 2.2
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -2
Query: 338 LFIYFDECFLEDFRHFQRTVYDDSSCCLVKYFRNSNLHSVYRFIE--NVYSYVSEPLW 171
LF F C L F + T+ D + L K F + L S+ FI+ +Y+Y W
Sbjct: 76 LFSLFGSCMLFRFIKYPSTIKDSWNHHLEKLFIATCLLSISTFIDMLAIYAYPDTGEW 133
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 3.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 334 SSTLMNASWKTLDTFKELSTTIPRAASSNIFET 236
S+ L+N SW+ D KE++ P + + +T
Sbjct: 280 SNRLVNGSWENNDFTKEINNNFPDRSETPTLQT 312
>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 25.0 bits (52), Expect = 5.2
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = +3
Query: 183 RYIRVNIFYKSIYTV*IGV----SKIFDEAARGIVVDSSLKVSKVFQEAFIKVDEEGATA 350
RY++VN + I + V S++ DE A GI+ + + ++ F D+ TA
Sbjct: 95 RYLQVNPYVNGILQLNPDVLTIASELDDERANGIIRGPLHGIPFIVKDNFATKDKMDTTA 154
Query: 351 GAF 359
G++
Sbjct: 155 GSY 157
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 25.0 bits (52), Expect = 5.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 382 LGTAIRPVKAPAVAPSSSTLMNASWKTLDTFKELSTTIPRAASSN 248
LGTA P+K S S + + LDT ++ T+ ++AS N
Sbjct: 542 LGTASLPLKGNLYQISRSDDIKSGAPVLDTSSLVNPTLAKSASLN 586
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 24.6 bits (51), Expect = 6.8
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = -3
Query: 439 ANGLSTLKSKAAGGLRTSILGTAIRPVKAPAVAPSSSTLMNASWKTLDTFKELSTTIPRA 260
A+ S S AA TS A + A +S+ + +S T + STT
Sbjct: 70 ASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSL 129
Query: 259 ASSNI 245
ASS+I
Sbjct: 130 ASSSI 134
>SPBC14C8.04 |||acetolactate synthase regulatory
unit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 289
Score = 24.6 bits (51), Expect = 6.8
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = -3
Query: 274 TIPRAASSNIFETPIYTVYIDL*KMFTLMYRNLYGIFNNTSTTISLMRRSIYTKQYHILS 95
T+P A S+ I TP V +F + +N G+ + S ++ + ++I S
Sbjct: 48 TVPEAVSNIIMSTPFNRVQRPKRHVFNCLVQNEPGVLSRLSGILA-------ARGFNIDS 100
Query: 94 VVIIATDYRHTKK 56
+V+ AT+ + +
Sbjct: 101 LVVCATEVENLSR 113
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 24.2 bits (50), Expect = 9.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 164 ENAIKVPIHKSKHFL*IYI 220
ENAIK+ K+ HFL Y+
Sbjct: 282 ENAIKIGYSKTMHFLLTYL 300
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 24.2 bits (50), Expect = 9.0
Identities = 13/57 (22%), Positives = 27/57 (47%)
Frame = -3
Query: 379 GTAIRPVKAPAVAPSSSTLMNASWKTLDTFKELSTTIPRAASSNIFETPIYTVYIDL 209
G + P+ A + ST+ + K L KEL ++ + + ++ + +VY+ L
Sbjct: 47 GASNSPLSRDAASHLISTIETSIMKLLVVTKELLESLTNWSKGTVNDSAVSSVYVTL 103
>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
Alg2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 511
Score = 24.2 bits (50), Expect = 9.0
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -2
Query: 347 CSSLF-IYFDECFLEDFRHFQRTVYDDSSCCL 255
CSSL +Y L ++ HF + D S C+
Sbjct: 91 CSSLRQVYLTMILLTNYMHFDAIIVDQLSTCV 122
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,723,995
Number of Sequences: 5004
Number of extensions: 35600
Number of successful extensions: 105
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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