Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_J17
         (441 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0824 - 32243495-32244319,32244449-32244859                       36   0.011
11_01_0767 + 6438648-6438809,6439146-6440000                           34   0.058
11_01_0771 + 6453130-6454488                                           31   0.41 
03_01_0292 + 2255011-2255564,2256491-2256701,2256792-2256902,225...    29   2.2  
03_02_0920 + 12410551-12410893,12410992-12411095,12411192-124112...    27   5.1  
01_06_0191 - 27334412-27335155                                         27   5.1  
07_03_1773 - 29422660-29422806,29423103-29423201,29423811-294239...    27   8.8  
06_01_0876 - 6712224-6712812,6713777-6715233                           27   8.8  

>01_06_0824 - 32243495-32244319,32244449-32244859
          Length = 411

 Score = 36.3 bits (80), Expect = 0.011
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 294 VSKVFQEAFIKVDEEGATAGAFTGLIAVPKMEVLNPPA-ALDFKVDRPF 437
           VS V+ E+F++V+EEG  A A T ++        + P   +DF  D PF
Sbjct: 338 VSAVYHESFVEVNEEGTEAAAATAVVMTLGCAAPSAPVHVVDFVADHPF 386


>11_01_0767 + 6438648-6438809,6439146-6440000
          Length = 338

 Score = 33.9 bits (74), Expect = 0.058
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
 Frame = +3

Query: 258 AARGIVVDSSLKVSKVFQEAFIKVDEEGATAGAFTGL------IAVPKMEVLNPPAALDF 419
           A  G   D+++ VS V  +  ++V+EEG+ A A+T         ++   +   PP  +DF
Sbjct: 248 AVEGDGEDAAMFVSSVIHKVVVEVNEEGSEAAAYTEESDDDLGCSLYDDDYTPPPKLVDF 307

Query: 420 KVDRPFA 440
             D PFA
Sbjct: 308 VADHPFA 314


>11_01_0771 + 6453130-6454488
          Length = 452

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = +3

Query: 288 LKVSKVFQEAFIKVDEEGATAGAFTGLIAVPKMEVLNPPAALDFKVDRPFA 440
           L V  +  +A I+V+EEG  A A T    +P      PP  +DF  + PFA
Sbjct: 382 LFVGDIQHKAVIEVNEEGTVAAAATMTRMLPSGV---PPPPVDFVAEHPFA 429


>03_01_0292 +
           2255011-2255564,2256491-2256701,2256792-2256902,
           2257020-2257814
          Length = 556

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 394 RTSILGTAIRPVKAPAVAPSSSTLMNASWKTLD 296
           RT+++  A   V APAVAP+++  +    +T+D
Sbjct: 21  RTAVVAAAAGTVSAPAVAPAAAPSLQLQTQTVD 53


>03_02_0920 +
           12410551-12410893,12410992-12411095,12411192-12411297,
           12411388-12411607,12411733-12411917,12411988-12412103,
           12412208-12412279,12412551-12412598
          Length = 397

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 394 RTSILGTAIRPVKAPAVAPSSSTL--MNASWKTLDTFKELSTTIPRAAS 254
           RTS L   I P+KA AV  S  T   M+  W++   +  +S   P+  S
Sbjct: 90  RTSNLELIIEPLKATAVLTSYDTAQGMSVLWRSTTIYSVVSMLDPKVKS 138


>01_06_0191 - 27334412-27335155
          Length = 247

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 436 NGLSTLKSKAAGGLRTSILGTAIRPVKAPAVAPSSST 326
           N LS +K  A   +   +L   +  VKAPA AP++ST
Sbjct: 164 NALSAVKPLAVYSVDKVLLPFELFGVKAPAAAPTAST 200


>07_03_1773 -
           29422660-29422806,29423103-29423201,29423811-29423915,
           29423990-29424136,29424436-29424954
          Length = 338

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -2

Query: 290 QRTVYDDSSCCLVKYFRNSNLHSVYRFIENVYSYVSEPLWH 168
           +R  + D   C  +Y ++  +HS+ R +        EPL+H
Sbjct: 88  RRVSHHDRRTCEDRYSKSKFVHSIMRHLAETLHLDLEPLYH 128


>06_01_0876 - 6712224-6712812,6713777-6715233
          Length = 681

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 439 ANGLSTLKSKAAGGLRTSILGTAIRPVKAPAVAPSSSTLMNASW 308
           A GLS  +   + GL   +  TA RP +A A AP   T    S+
Sbjct: 43  AAGLSRRRLLQSAGLGLGLGLTAARPARAEATAPEEVTSNRMSY 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,973,367
Number of Sequences: 37544
Number of extensions: 182678
Number of successful extensions: 443
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)