Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_J16
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    30   0.26 
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    27   1.4  
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    25   5.5  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   5.5  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    25   9.6  

>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 180 PGLRIRRVNATICLADIITTYKPGDDIDIS 269
           P  R+ R    I LAD++   KPG++ID++
Sbjct: 391 PSGRLPRHREVILLADLVDVAKPGEEIDVT 420


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -1

Query: 441 KFKTENTYFTVVALYLSYTQYVLV-HITFFY 352
           +F+ E +Y+ VVA YL+Y   +++ H+  F+
Sbjct: 83  QFEDEPSYYYVVATYLTYLVLIIIGHVRDFF 113


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
 Frame = -3

Query: 424 YVFHCCCTIF-ILYTVCSGSH-HFLLQRLDDGISRFFCIITVLCMTGDY--IFKVKEISM 257
           Y+F    ++F +L +V S    H + + +     +FF ++ +  ++  Y  I    +I +
Sbjct: 264 YIFSALMSVFCLLLSVASLELLHTVQEVVGMQAIKFFIVLILSSLSNFYLNIATFTQIKV 323

Query: 256 SSPGLYVVMMSARQMV 209
           +SP  Y++ +SAR ++
Sbjct: 324 TSPVTYMISVSARSIL 339


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 406 CTIFILYTVCSGSHHFLLQRLDDGISRF 323
           CT+FIL   C+ +++ +L +L +  S F
Sbjct: 403 CTLFILPETCNHAYNTMLCKLTEDTSSF 430


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 532 PVHDTSTQSHPVHDTLQTLEVTFSRLH 452
           P H T  Q H       +LE+  S+LH
Sbjct: 53  PQHSTENQGHTGTSDTSSLEMELSKLH 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,758,203
Number of Sequences: 5004
Number of extensions: 29668
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)