Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_J16
         (546 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M55683-1|AAA63904.1|  340|Homo sapiens cartilage matrix protein ...    33   0.65 
M55682-1|AAB38702.1|  496|Homo sapiens cartilage matrix protein ...    33   0.65 
BC131710-1|AAI31711.1|  480|Homo sapiens MATN1 protein protein.        33   0.65 
AL137857-2|CAI19322.1|  496|Homo sapiens matrilin 1, cartilage m...    33   0.65 

>M55683-1|AAA63904.1|  340|Homo sapiens cartilage matrix protein
           protein.
          Length = 340

 Score = 33.1 bits (72), Expect = 0.65
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = -3

Query: 358 LLQRLDDGISRFFCIITVLCMTGDYIFKVKEISMSSPGLY 239
           ++++L       FC+++ LC TGD+    +++ +SSPG Y
Sbjct: 52  VIEKLSRKFQEAFCVVSDLCATGDH--DCEQVCISSPGSY 89


>M55682-1|AAB38702.1|  496|Homo sapiens cartilage matrix protein
           protein.
          Length = 496

 Score = 33.1 bits (72), Expect = 0.65
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = -3

Query: 358 LLQRLDDGISRFFCIITVLCMTGDYIFKVKEISMSSPGLY 239
           ++++L       FC+++ LC TGD+    +++ +SSPG Y
Sbjct: 208 VIEKLSRKFQEAFCVVSDLCATGDH--DCEQVCISSPGSY 245


>BC131710-1|AAI31711.1|  480|Homo sapiens MATN1 protein protein.
          Length = 480

 Score = 33.1 bits (72), Expect = 0.65
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = -3

Query: 358 LLQRLDDGISRFFCIITVLCMTGDYIFKVKEISMSSPGLY 239
           ++++L       FC+++ LC TGD+    +++ +SSPG Y
Sbjct: 192 VIEKLSRKFQEAFCVVSDLCATGDH--DCEQVCISSPGSY 229


>AL137857-2|CAI19322.1|  496|Homo sapiens matrilin 1, cartilage
           matrix protein protein.
          Length = 496

 Score = 33.1 bits (72), Expect = 0.65
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = -3

Query: 358 LLQRLDDGISRFFCIITVLCMTGDYIFKVKEISMSSPGLY 239
           ++++L       FC+++ LC TGD+    +++ +SSPG Y
Sbjct: 208 VIEKLSRKFQEAFCVVSDLCATGDH--DCEQVCISSPGSY 245


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,817,664
Number of Sequences: 237096
Number of extensions: 1067761
Number of successful extensions: 2034
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2034
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)