Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_J14
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 328 4e-91
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 225 4e-60
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 182 5e-47
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 180 2e-46
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 175 6e-45
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 155 7e-39
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 139 4e-34
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 132 5e-32
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 128 7e-31
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 126 4e-30
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 117 1e-27
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 113 2e-26
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 111 6e-26
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 111 1e-25
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 110 2e-25
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 107 2e-24
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 103 2e-23
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 102 4e-23
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 100 2e-22
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 96 3e-21
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 91 1e-19
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 86 4e-18
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 72 6e-14
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 39 7e-04
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 39 7e-04
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 35 0.012
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 31 0.14
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 31 0.19
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 29 0.57
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 28 1.3
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 27 1.8
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 26 4.0
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 26 5.3
SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual 26 5.3
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 25 7.1
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 328 bits (806), Expect = 4e-91
Identities = 148/213 (69%), Positives = 180/213 (84%)
Frame = +2
Query: 2 FPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQP 181
FP+YV + +K +G++ PTPIQ Q WP+AMSG+++VG++ TGSGKTL+Y LPAIVHIN QP
Sbjct: 129 FPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQP 188
Query: 182 PIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEI 361
+ GDGPI LVLAPTRELA QIQQ ++FG SS +RNTCV+GG P+ Q RDL RGVEI
Sbjct: 189 LLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEI 248
Query: 362 VIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSA 541
IATPGRL+D L+ TNL+R TYLVLDEADRMLDMGFEPQIRKI+DQIRPDRQT+M+SA
Sbjct: 249 CIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSA 308
Query: 542 TWPKEVRKLAEDYLGDYVQINIGSLQLSANHNI 640
TWPKEV++LA DYL DY+Q+ +GSL L+A+HNI
Sbjct: 309 TWPKEVQRLARDYLNDYIQVTVGSLDLAASHNI 341
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 225 bits (550), Expect = 4e-60
Identities = 106/205 (51%), Positives = 145/205 (70%), Gaps = 3/205 (1%)
Frame = +2
Query: 26 IKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 205
I S+GY+ PT IQAQ P SG++++GVA+TGSGKT+A++LP HI +Q P++ G+GP
Sbjct: 433 INSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGP 492
Query: 206 IALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 385
IA+++ PTRELA QI + F +R C +GGAP ++Q DL+RG EIV+ TPGR+
Sbjct: 493 IAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRM 552
Query: 386 IDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKE 556
ID L TNL RCTYLVLDEADRM D+GFEPQ+ +II+ IRPDRQT+++SAT+P+
Sbjct: 553 IDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRA 612
Query: 557 VRKLAEDYLGDYVQINIGSLQLSAN 631
+ LA L V+I +G + A+
Sbjct: 613 MEALARKVLKKPVEITVGGRSVVAS 637
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 182 bits (442), Expect = 5e-47
Identities = 96/206 (46%), Positives = 135/206 (65%), Gaps = 6/206 (2%)
Frame = +2
Query: 41 YKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVL 220
YK+PTPIQA WP ++G+++VG+A+TGSGKT+A+ +PA+ ++N + P LV+
Sbjct: 185 YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVV 242
Query: 221 APTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLE 400
+PTRELA Q + + + ++ V+GGAPK EQAR + ++I TPGRL+D +
Sbjct: 243 SPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQAR-AAKNASVIIGTPGRLLDLIN 301
Query: 401 KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPD------RQTLMWSATWPKEVR 562
G+ + + YLVLDEADRMLD GFE IR II PD RQT+ +SATWP+ VR
Sbjct: 302 DGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISH-TPDPTRNGSRQTVFFSATWPESVR 360
Query: 563 KLAEDYLGDYVQINIGSLQLSANHNI 640
LA +L D V+I IGS +L+A+ NI
Sbjct: 361 ALAATFLKDPVKITIGSDELAASQNI 386
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 180 bits (437), Expect = 2e-46
Identities = 98/227 (43%), Positives = 144/227 (63%), Gaps = 17/227 (7%)
Frame = +2
Query: 11 YVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI-VHINNQP-- 181
++ Q IK GY PTP+Q PI SG++L+ AQTGSGKT ++ P + + + P
Sbjct: 179 HLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAA 238
Query: 182 -PIRRGDG---------PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQ 331
P+ + G P L+LAPTREL QI + + +F S+VR V+GGA R Q
Sbjct: 239 VPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQ 298
Query: 332 ARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIR 511
R +++G +++ ATPGRL+D +++G +L +LVLDEADRMLDMGFEPQIR I++
Sbjct: 299 IRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGAD 358
Query: 512 ----PDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNI 640
+RQTLM+SAT+P++++ LA D+L DYV +++G + S + NI
Sbjct: 359 MTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVG-STSENI 404
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 175 bits (425), Expect = 6e-45
Identities = 95/226 (42%), Positives = 135/226 (59%), Gaps = 22/226 (9%)
Frame = +2
Query: 5 PDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 184
P + + +K + YK+P+ IQ P+ + K+L+G+A+TGSGKT A+I+P I+ I+ PP
Sbjct: 257 PSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPP 316
Query: 185 IRRGD---GPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGV 355
+ + GP A+VLAPTRELAQQIQ ++F R V GG EQ+ + +G
Sbjct: 317 LTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGA 376
Query: 356 EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPD------ 517
IV+ATPGRL+D LE+ L +CTY+V+DEADRMLDMGFE + KI+ +
Sbjct: 377 HIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKD 436
Query: 518 -------------RQTLMWSATWPKEVRKLAEDYLGDYVQINIGSL 616
RQT+M+SAT P V LA+ YL + V + IG++
Sbjct: 437 GSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNI 482
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 155 bits (375), Expect = 7e-39
Identities = 87/205 (42%), Positives = 126/205 (61%), Gaps = 3/205 (1%)
Frame = +2
Query: 8 DYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI-NNQPP 184
D +C+A + +G+K PTPIQ + P+ ++ ++++G+AQTGSGKT A+ LP I + NN P
Sbjct: 55 DELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSP 114
Query: 185 IRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIV 364
A+VLAPTRELA QI + G S VR+ + GG QA L + ++
Sbjct: 115 F------FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVL 168
Query: 365 IATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWS 538
+ TPGRL+D LE KG +L+ YL++DEADR+LDM F P I KI+ I +R+TL++S
Sbjct: 169 VCTPGRLMDHLENTKG-FSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFS 227
Query: 539 ATWPKEVRKLAEDYLGDYVQINIGS 613
AT +V KL L V++ + S
Sbjct: 228 ATMTSKVEKLQRASLHQPVRVAVSS 252
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 139 bits (336), Expect = 4e-34
Identities = 73/196 (37%), Positives = 114/196 (58%)
Frame = +2
Query: 20 QAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 199
+AI G+K PTPIQ + P+ + G+++VG+A+TGSGKT A+++P I H+ +
Sbjct: 82 RAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKST---LANS 138
Query: 200 GPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 379
AL+L+P RELA Q +V +F + +R+ + GG EQ L +IV+ATPG
Sbjct: 139 NTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPG 198
Query: 380 RLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEV 559
R + + L Y+V DEADR+ +MGF Q+ +I+ + RQTL++SAT P+ +
Sbjct: 199 RFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTL 258
Query: 560 RKLAEDYLGDYVQINI 607
A+ L D V + +
Sbjct: 259 VDFAKAGLQDPVLVRL 274
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 132 bits (318), Expect = 5e-32
Identities = 82/190 (43%), Positives = 124/190 (65%), Gaps = 6/190 (3%)
Frame = +2
Query: 20 QAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI--VHINNQPPIRR 193
+AIK MG++ T IQ + P ++G++++G A+TGSGKTLA+++P I ++ P R
Sbjct: 102 KAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RN 160
Query: 194 GDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIAT 373
G G I +++PTRELA QI VA E + V GGA +R +A L +GV +++AT
Sbjct: 161 GTGVI--IISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVAT 218
Query: 374 PGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRP--DRQTLMWSA 541
PGRL+D L+ KG + LV+DEADR+L++GFE ++R+I+ +I P +RQTL++SA
Sbjct: 219 PGRLLDHLQNTKGFV-FRNLRSLVIDEADRILEIGFEDEMRQIM-KILPSENRQTLLFSA 276
Query: 542 TWPKEVRKLA 571
T +V LA
Sbjct: 277 TQTTKVEDLA 286
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 128 bits (309), Expect = 7e-31
Identities = 65/190 (34%), Positives = 107/190 (56%)
Frame = +2
Query: 38 GYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 217
G++ P+PIQ + PIA+SG++++ A+ G+GKT A+++P++ ++ + + L+
Sbjct: 63 GFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLI 117
Query: 218 LAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL 397
L PTRELA Q QV G V+ GG R+ L V IV+ TPGR++D
Sbjct: 118 LVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLA 177
Query: 398 EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAED 577
KG + CT V+DEAD++L F P I +++ +RQ ++SAT+P V+ +
Sbjct: 178 GKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDK 237
Query: 578 YLGDYVQINI 607
+L +IN+
Sbjct: 238 HLNKPYEINL 247
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 126 bits (303), Expect = 4e-30
Identities = 70/206 (33%), Positives = 119/206 (57%), Gaps = 1/206 (0%)
Frame = +2
Query: 14 VCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 193
+ + + ++G++ PT IQ + P+A+ GK++VG A TGSGKT A+I+P + + +P ++
Sbjct: 270 ILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRP--KK 327
Query: 194 GDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIAT 373
L+L PTRELA Q VA++ + + + GG + Q ++L + +IVIAT
Sbjct: 328 VPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIAT 387
Query: 374 PGRLIDFLEKGT-TNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWP 550
PGR ID + ++ +V+DEADRML+ GF ++ +II RQT+++SAT
Sbjct: 388 PGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMT 447
Query: 551 KEVRKLAEDYLGDYVQINIGSLQLSA 628
+V L L V++ + + + +A
Sbjct: 448 DKVDDLIRLSLNRPVRVFVDNKKTTA 473
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 117 bits (282), Expect = 1e-27
Identities = 69/184 (37%), Positives = 107/184 (58%), Gaps = 1/184 (0%)
Frame = +2
Query: 23 AIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG 202
A+K+ + T IQ Q P A+ G++++G A+TGSGKTLA+I+P I ++ + DG
Sbjct: 53 ALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DG 111
Query: 203 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 382
ALV++PTRELA Q + + G + GG +E+ L R + I++ TPGR
Sbjct: 112 LGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR-MNILVCTPGR 170
Query: 383 LIDFLEKGTT-NLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEV 559
L+ +++ + L+LDEADR+LDMGF + I+ + RQT+++SAT K V
Sbjct: 171 LLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSV 230
Query: 560 RKLA 571
+ LA
Sbjct: 231 KDLA 234
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 113 bits (273), Expect = 2e-26
Identities = 76/206 (36%), Positives = 113/206 (54%), Gaps = 21/206 (10%)
Frame = +2
Query: 35 MGYKDPTPIQAQGWPIAMS--GKNLVGVAQTGSGKTLAYILPAIVHINNQPPI--RRGDG 202
M PT IQ+ P ++ K+ AQTGSGKTLAY+LP + + P R G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 203 PIALVLAPTRELAQQIQQVASEFGN---SSYVRNTCVFGGAPKREQARDLERGVEIVIAT 373
A+++APTREL QQI VA++ N S ++ + V GG K+ + + +GV I+I T
Sbjct: 217 IYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGT 276
Query: 374 PGRLIDFLEK-GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIR------------P 514
PGRL D LE ++ + ++VLDE DR++DMGFE + KI+ + P
Sbjct: 277 PGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIP 336
Query: 515 DRQ-TLMWSATWPKEVRKLAEDYLGD 589
R+ T++ SAT V++L++ L D
Sbjct: 337 SRKVTMLCSATMKDTVKRLSDSALKD 362
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 111 bits (268), Expect = 6e-26
Identities = 64/202 (31%), Positives = 110/202 (54%)
Frame = +2
Query: 20 QAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 199
+ I + G++ P+ IQ + + ++++ AQ+G+GKT + + + I+ +++
Sbjct: 32 RGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTS--LKQCQ 89
Query: 200 GPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 379
AL+LAPTRELAQQIQ+V G+ V GG R+ L+ GV +V+ TPG
Sbjct: 90 ---ALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPG 146
Query: 380 RLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEV 559
R+ D +++ VLDEAD ML GF+ QI I + P Q ++ SAT P++V
Sbjct: 147 RVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDV 206
Query: 560 RKLAEDYLGDYVQINIGSLQLS 625
++ ++ D ++I + +L+
Sbjct: 207 LEVTTKFMRDPIRILVKKDELT 228
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 111 bits (266), Expect = 1e-25
Identities = 67/192 (34%), Positives = 104/192 (54%), Gaps = 6/192 (3%)
Frame = +2
Query: 11 YVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 190
++ +K++ +PT IQ + G+N +G A+TGSGKT A+ LP I + P
Sbjct: 17 WLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDP--- 73
Query: 191 RGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIA 370
G AL+L PTRELA QI + + G + +++ + GG Q+ DL + +V+A
Sbjct: 74 --SGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVA 131
Query: 371 TPGRLIDFL----EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI--RPDRQTLM 532
TPGRL D + E+ L+R +LV+DEADR+L F + + DRQTL+
Sbjct: 132 TPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLL 191
Query: 533 WSATWPKEVRKL 568
++AT +R+L
Sbjct: 192 FTATVTDAIRQL 203
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 110 bits (264), Expect = 2e-25
Identities = 70/184 (38%), Positives = 100/184 (54%), Gaps = 10/184 (5%)
Frame = +2
Query: 23 AIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG 202
A+ + G+K TP+QA P+ + K+LV A TGSGKTLAY+LP + + G G
Sbjct: 15 AVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLG 74
Query: 203 PIALVLAPTRELAQQIQQVASEF---------GNSSYVRNTCVFG-GAPKREQARDLERG 352
AL++APTRELA QI V E G V + + G G + A E+
Sbjct: 75 --ALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKN 132
Query: 353 VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLM 532
+VI TPGRL + L + + L+LDEAD ++DMGF+ ++ II Q+ R+T +
Sbjct: 133 PSVVIGTPGRLNEMLSH--ISSKHLEILILDEADTLIDMGFQRTLQSIISQLPKQRRTGL 190
Query: 533 WSAT 544
+SAT
Sbjct: 191 FSAT 194
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 107 bits (256), Expect = 2e-24
Identities = 65/186 (34%), Positives = 99/186 (53%), Gaps = 3/186 (1%)
Frame = +2
Query: 20 QAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 199
+AI ++ PT +Q++ P+A+ GK+LV A+TGSGKT AY++P + + Q I
Sbjct: 27 RAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQ 86
Query: 200 -GPIALVLAPTRELAQQIQQVASEFGN--SSYVRNTCVFGGAPKREQARDLERGVEIVIA 370
G AL+L PTRELAQQ+ V + S ++R V + Q L +IVIA
Sbjct: 87 RGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIA 146
Query: 371 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWP 550
TP R + + G L + +LV+DEAD ML G+ ++ + + Q+ + SAT
Sbjct: 147 TPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLS 206
Query: 551 KEVRKL 568
K + L
Sbjct: 207 KNIASL 212
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 103 bits (248), Expect = 2e-23
Identities = 60/194 (30%), Positives = 103/194 (53%)
Frame = +2
Query: 20 QAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 199
+ I + GY+ P+ +Q++ G++++ AQ+G+GKT + + + I+ +R
Sbjct: 34 RGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ 91
Query: 200 GPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 379
AL+L+PTRELA QIQ V G+ V+ GG + L+ G +V TPG
Sbjct: 92 ---ALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPG 148
Query: 380 RLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEV 559
R+ D + + + L+LDEAD +L+ GF+ QI I + P Q ++ SAT P++V
Sbjct: 149 RVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDV 208
Query: 560 RKLAEDYLGDYVQI 601
++ + + V+I
Sbjct: 209 LEMTNKFTTNPVRI 222
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 102 bits (245), Expect = 4e-23
Identities = 67/189 (35%), Positives = 104/189 (55%), Gaps = 8/189 (4%)
Frame = +2
Query: 23 AIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG 202
++ G+ P PIQ+ P A G +++G A TGSGKTLA+ +P + H +R D
Sbjct: 136 SLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDA 190
Query: 203 PI--ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATP 376
ALV+APTRELA QI Q S +R + GG ++Q R L + +V+ATP
Sbjct: 191 KYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATP 250
Query: 377 GRLIDFLEKG--TTNLQRCTYLVLDEADRMLDMGFEPQIRKIID----QIRPDRQTLMWS 538
GRL + + T N ++ LVLDEADR+L ++ K+++ + RQT ++S
Sbjct: 251 GRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFS 310
Query: 539 ATWPKEVRK 565
AT+ + +++
Sbjct: 311 ATFDEGLQQ 319
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 100 bits (239), Expect = 2e-22
Identities = 66/205 (32%), Positives = 113/205 (55%), Gaps = 3/205 (1%)
Frame = +2
Query: 20 QAIKSMGYKDPTPIQAQGWPIAMSG--KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 193
+ I SM ++ P+ IQ + P+ +S +N++G +Q+G+GKT A+ L + ++ P
Sbjct: 127 KGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVP--- 183
Query: 194 GDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIAT 373
P A+ LAP+RELA+QI V +E G + V+ FG K + + +IVI T
Sbjct: 184 --KPQAICLAPSRELARQIMDVVTEMGKYTEVKTA--FG--IKDSVPKGAKIDAQIVIGT 237
Query: 374 PGRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIDQIRPDRQTLMWSATWP 550
PG ++D +++ + + VLDEAD MLD G Q +I + + Q +++SAT+
Sbjct: 238 PGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFS 297
Query: 551 KEVRKLAEDYLGDYVQINIGSLQLS 625
+ V K AE + + +I + + +LS
Sbjct: 298 ERVEKYAERFAPNANEIRLKTEELS 322
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 96.3 bits (229), Expect = 3e-21
Identities = 66/199 (33%), Positives = 105/199 (52%), Gaps = 5/199 (2%)
Frame = +2
Query: 23 AIKSMGYKDPTPIQAQGW-PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 199
++ G++ TP+Q + + + +N V A+TG+GKTLA++L A + P
Sbjct: 52 SLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSS 111
Query: 200 GPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERG-VEIVIATP 376
+++L+PTRELA QI + A + + +R + GG K + + RG ++IATP
Sbjct: 112 KIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATP 171
Query: 377 GRLIDFLEKGTTNLQRCT-YLVLDEADRMLDMGFEPQIRKIIDQIRPDR-QTLMWSATWP 550
GRL D L+ T +LDEADR++DMGF I I + + + + L +SAT P
Sbjct: 172 GRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMP 231
Query: 551 KEVRKLAEDYLG-DYVQIN 604
+V + LG D+ IN
Sbjct: 232 PKVSNVFRGILGTDFKLIN 250
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 91.5 bits (217), Expect = 1e-19
Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 4/207 (1%)
Frame = +2
Query: 2 FPDYV-CQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 178
FP+ + C+ +K + T IQ P S ++L+ A TGSGKT+AY+ P + +
Sbjct: 52 FPEGILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLH 111
Query: 179 PPIRRGDGPIALVLAPTRELAQQIQQVASE--FGNSSYVRNTCVFGGAPKREQARDLERG 352
P G A+++APTREL +QI + A + FG S + +E+A L
Sbjct: 112 VP----GGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSK-SNEKIQEKAPKLREK 166
Query: 353 VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDR-QTL 529
++ I TP RL+ ++ G + ++ + V+DEADR+ + GF Q I+
Sbjct: 167 YDMCIGTPMRLVQAIQTG-LSFEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKS 225
Query: 530 MWSATWPKEVRKLAEDYLGDYVQINIG 610
++SAT P V +LA+ D ++I +G
Sbjct: 226 LFSATIPSRVEELAKVVTVDPIRIIVG 252
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 86.2 bits (204), Expect = 4e-18
Identities = 58/202 (28%), Positives = 106/202 (52%), Gaps = 6/202 (2%)
Frame = +2
Query: 20 QAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 199
+AI G++ P+ +Q P ++ G +++ A++G GKT ++L + I P+ D
Sbjct: 64 RAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---D 117
Query: 200 GPIA-LVLAPTRELAQQIQQVASEFGNS-SYVRNTCVFGGAPKR---EQARDLERGVEIV 364
G ++ LVL TRELA QI+ + F VR +GG + E +D + IV
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIV 177
Query: 365 IATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIDQIRPDRQTLMWSA 541
+ATPGRL + + + + VLDE D++L+ + I+++ P +Q +M+SA
Sbjct: 178 VATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSA 237
Query: 542 TWPKEVRKLAEDYLGDYVQINI 607
T E+R + + ++ + ++I +
Sbjct: 238 TLSNEIRPICKKFMQNPLEIYV 259
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 72.1 bits (169), Expect = 6e-14
Identities = 43/150 (28%), Positives = 82/150 (54%), Gaps = 6/150 (4%)
Frame = +2
Query: 77 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 256
P+ G ++ A TGSGKTL+Y++P + ++++ R +V+ PTREL Q+ +
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLR----CVVIVPTRELTVQVAK 223
Query: 257 VASEFGNSSYVRNTCVFGGAPKREQARDL-----ERGVEIVIATPGRLIDFLEKGTT-NL 418
+ + + ++ G R + L E ++++++TPGRL+D + + +L
Sbjct: 224 TFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSL 283
Query: 419 QRCTYLVLDEADRMLDMGFEPQIRKIIDQI 508
Q Y+V+DEADR+LD F+ + ++ +I
Sbjct: 284 QHLRYMVIDEADRLLDQSFQDWVDTVMMEI 313
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 38.7 bits (86), Expect = 7e-04
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +2
Query: 98 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 274
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q + +E G
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDMMLRVNEKG 1265
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 38.7 bits (86), Expect = 7e-04
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +2
Query: 98 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 274
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q + +E G
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDMMLRVNEKG 1265
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 34.7 bits (76), Expect = 0.012
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +2
Query: 335 RDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE-PQIRKIIDQIR 511
R L++G+E VI TP RL+ ++ + NLQR +++ + M M + P + I ++
Sbjct: 135 RCLKKGLECVIETPPRLLMNKDEISLNLQRLSHMETILSKLMPSMSLDLPSLEAKIAELS 194
Query: 512 PDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQ 619
Q T+P +V L + LG Y Q+ + Q
Sbjct: 195 ESLQ------TYPDKV--LTDIELGSYQQVTLNETQ 222
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 31.1 bits (67), Expect = 0.14
Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 2/150 (1%)
Frame = +2
Query: 101 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNS 280
L+ VA+TGSGKT LP +H + +G+ I P R A VA+
Sbjct: 437 LLIVAETGSGKTTQ--LPQFLH---EAGYTKGNKKICCT-QPRRVAA---MSVAARVAKE 487
Query: 281 SYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI-DFLEKGTTNLQRCTYLVLDEA-D 454
VR G + + E A E+ V I T G L+ +FL + +L + +++DEA +
Sbjct: 488 MDVRLGQEVGYSIRFENATS-EKTV-IKYLTDGMLLREFLTE--PDLASYSVIIIDEAHE 543
Query: 455 RMLDMGFEPQIRKIIDQIRPDRQTLMWSAT 544
R L + K I + RPD + L+ SAT
Sbjct: 544 RTLHTDILFGLVKDIARFRPDLKVLISSAT 573
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.7 bits (66), Expect = 0.19
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +2
Query: 86 MSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 244
+SGK++ + TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 29.1 bits (62), Expect = 0.57
Identities = 27/121 (22%), Positives = 52/121 (42%)
Frame = +2
Query: 95 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 274
+N++ TG GKT + A+V +N +R + +APT+ L Q + +
Sbjct: 87 ENVLVALPTGLGKTF---IAAVVMMNY---LRWFPKSYIVFMAPTKPLVTQQMEACYKIT 140
Query: 275 NSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 454
+ + G P + + + TP +++ ++ G + R + LV+DEA
Sbjct: 141 GIPKSQTAELSGHVPVTTR-NQYYQSRNVFFVTPQTILNDIKHGICDRTRISCLVIDEAH 199
Query: 455 R 457
R
Sbjct: 200 R 200
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 8 DYVCQAIKSMGYKDPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAIVHINN 175
D +C+ + Y+ IQ+ +PIA + +N++ A TG+GKT +L + I+N
Sbjct: 265 DILCRKT-FLSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISN 320
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 27.5 bits (58), Expect = 1.8
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +2
Query: 260 ASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR-LIDFL---EKGTTNLQRC 427
A +FG+ S + C G KR RD+ G + ++ PG +D L K +L
Sbjct: 215 APKFGDRSCYQLPCNARGLAKRAILRDVREGADGIMVKPGTPYLDILAMASKLADDLPIA 274
Query: 428 TYLVLDE 448
TY V E
Sbjct: 275 TYQVSGE 281
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 275 NSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRC 427
NS+YV+++C + K+ Q EIVIAT RL+ + T C
Sbjct: 16 NSNYVQSSCAASLSGKKAQ--------EIVIATESRLLIYKVDATDGRMNC 58
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +2
Query: 26 IKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 199
+ ++GY D P G P+ ++GK + V GK +L + + + P ++RGD
Sbjct: 280 VVAIGYGDGFPQVRNGCPVIINGKRVPTV-----GKVCMDML--AIDVTDVPDVKRGD 330
>SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 464 DMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGD 589
D+GFE R+I D L+ P+E L +D + D
Sbjct: 157 DVGFEKPSREIFDYAMEKAVKLLGQEIQPEECMHLGDDLIKD 198
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 203 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLE 346
PI ++ +P E+ ++V + Y+ TC+ P+ E + DLE
Sbjct: 93 PIDIIFSPGEEVF--FERVGGDI--PVYLSGTCIITNIPEEEDSSDLE 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,479
Number of Sequences: 5004
Number of extensions: 60299
Number of successful extensions: 232
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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