Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_J12
         (307 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch...    25   2.5  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   3.3  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    24   5.8  
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    23   7.7  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    23   7.7  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    23   7.7  

>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 209

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 144 VLHSV-LCYVLCACVLTCRINKLLVAVSDLNFLTF*HINKSLHFVFF 281
           +LH+  LCY+L  C L   I+  ++   ++N  T  H+ ++L+  F+
Sbjct: 1   MLHATQLCYLLLFCFLPISISSAVLIEREINVPTT-HVLQTLYTRFW 46


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -1

Query: 298 QLRADKKNTKCKDLFMCQKVKKFKSLTATSNLF 200
           +++  + NT  K++ + +K KKF +     N F
Sbjct: 187 RIKKSQLNTATKEISLLKKAKKFPNFPKLKNFF 219


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = -2

Query: 249 VKKL-RNLNHLQRQVTYLSD 193
           VK+L RNL  L++Q+ Y+SD
Sbjct: 122 VKRLARNLEVLEKQIHYISD 141


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 306 AHG-NYEQIKKTRNVKIYLCVKKLRNLNHLQRQV 208
           AH  ++ Q+K+  N+  Y C+K    +N+++ QV
Sbjct: 80  AHNFDFYQVKQQNNLDFYACIKL---VNYIRSQV 110


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 13  PKITTTEPWDGNDGELPLEEDIDLS 87
           PK++TT+        L  EEDI LS
Sbjct: 347 PKLSTTQSTPVKPASLQSEEDIQLS 371


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 16  KITTTEPWDGNDGELPLEEDIDLSDV 93
           K   T P + N+  LPL+    L DV
Sbjct: 577 KSCATSPKENNEDSLPLQRSPSLDDV 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 894,904
Number of Sequences: 5004
Number of extensions: 12619
Number of successful extensions: 50
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)