Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_J12
         (307 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40411-4|AAC47065.1|  440|Caenorhabditis elegans Temporarily ass...    58   1e-09
Z98866-5|CAB11548.1|  436|Caenorhabditis elegans Hypothetical pr...    52   1e-07
Z96100-3|CAD60418.1|  893|Caenorhabditis elegans Hypothetical pr...    27   2.6  
Z96100-2|CAD60417.1|  912|Caenorhabditis elegans Hypothetical pr...    27   2.6  
Z96100-1|CAB09530.2|  964|Caenorhabditis elegans Hypothetical pr...    27   2.6  
Z79752-1|CAB02081.1|  323|Caenorhabditis elegans Hypothetical pr...    27   2.6  
AY150817-1|AAN61051.1|  893|Caenorhabditis elegans ADR-1E protein.     27   2.6  
Z77659-5|CAB01168.1|  953|Caenorhabditis elegans Hypothetical pr...    27   3.4  
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog...    27   3.4  
U28993-8|AAK31496.1|  632|Caenorhabditis elegans C.elegans homeo...    27   3.4  
U28993-7|AAL27244.1|  641|Caenorhabditis elegans C.elegans homeo...    27   3.4  
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro...    27   3.4  
AY150816-1|AAN61050.1|  912|Caenorhabditis elegans ADR-1D protein.     26   4.5  
AY150815-1|AAN61049.1|  964|Caenorhabditis elegans ADR-1C protein.     26   4.5  

>U40411-4|AAC47065.1|  440|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 320 protein.
          Length = 440

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 25/38 (65%), Positives = 28/38 (73%)
 Frame = +1

Query: 1   GAEMPKITTTEPWDGNDGELPLEEDIDLSDVDLEKDEL 114
           G   PKI  TE WDG DG LP E+DIDLSD+DL+K EL
Sbjct: 403 GDGFPKIQKTEKWDGKDGALPAEDDIDLSDIDLDKTEL 440


>Z98866-5|CAB11548.1|  436|Caenorhabditis elegans Hypothetical
           protein Y49E10.4 protein.
          Length = 436

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 24/34 (70%), Positives = 27/34 (79%), Gaps = 1/34 (2%)
 Frame = +1

Query: 16  KITTTEPWDGNDGELPLEEDIDLSDVDL-EKDEL 114
           KI  T+PWDG D ELP+ EDIDLSDVD+ EK EL
Sbjct: 403 KIVETQPWDGKDKELPVMEDIDLSDVDMDEKTEL 436


>Z96100-3|CAD60418.1|  893|Caenorhabditis elegans Hypothetical
           protein H15N14.1e protein.
          Length = 893

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 294 YEQIKKTRNVKIYLCVKKLRNLNHLQRQVTYLSD 193
           YEQIK+T++++++    KL   N L  Q   LS+
Sbjct: 708 YEQIKETKSLRVHCTADKLFKWNTLGIQGALLSN 741


>Z96100-2|CAD60417.1|  912|Caenorhabditis elegans Hypothetical
           protein H15N14.1d protein.
          Length = 912

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 294 YEQIKKTRNVKIYLCVKKLRNLNHLQRQVTYLSD 193
           YEQIK+T++++++    KL   N L  Q   LS+
Sbjct: 708 YEQIKETKSLRVHCTADKLFKWNTLGIQGALLSN 741


>Z96100-1|CAB09530.2|  964|Caenorhabditis elegans Hypothetical
           protein H15N14.1c protein.
          Length = 964

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 294 YEQIKKTRNVKIYLCVKKLRNLNHLQRQVTYLSD 193
           YEQIK+T++++++    KL   N L  Q   LS+
Sbjct: 779 YEQIKETKSLRVHCTADKLFKWNTLGIQGALLSN 812


>Z79752-1|CAB02081.1|  323|Caenorhabditis elegans Hypothetical
           protein D2005.1 protein.
          Length = 323

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 294 YEQIKKTRNVKIYLCVKKLRNLNHLQRQVTYLSD 193
           YEQIK+T++++++    KL   N L  Q   LS+
Sbjct: 138 YEQIKETKSLRVHCTADKLFKWNTLGIQGALLSN 171


>AY150817-1|AAN61051.1|  893|Caenorhabditis elegans ADR-1E protein.
          Length = 893

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 294 YEQIKKTRNVKIYLCVKKLRNLNHLQRQVTYLSD 193
           YEQIK+T++++++    KL   N L  Q   LS+
Sbjct: 708 YEQIKETKSLRVHCTADKLFKWNTLGIQGALLSN 741


>Z77659-5|CAB01168.1|  953|Caenorhabditis elegans Hypothetical
           protein F23B12.7 protein.
          Length = 953

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 1   GAEMPKITTTEPWDGNDGELPLEEDIDLSDVDLEKD 108
           GAE  K    +  + +D ++  ++DIDL+D++ E+D
Sbjct: 804 GAEKSKRNKKKDVEEDDVDMDEDDDIDLNDLNEEED 839


>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
            domain protein 1 protein.
          Length = 1346

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 197  PTSKHTRTQHIAQNTMKHYTQFT 129
            P  KHT T H+A+  ++H+++ T
Sbjct: 1053 PVYKHTLTYHLAEYMVEHFSEGT 1075


>U28993-8|AAK31496.1|  632|Caenorhabditis elegans C.elegans homeobox
           protein 38,isoform a protein.
          Length = 632

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 46  NDGELPLEEDIDLSDVDLEKDE 111
           ND EL  EED+++ D + E +E
Sbjct: 572 NDSELAYEEDVEIGDEEEEDEE 593


>U28993-7|AAL27244.1|  641|Caenorhabditis elegans C.elegans homeobox
           protein 38,isoform b protein.
          Length = 641

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 46  NDGELPLEEDIDLSDVDLEKDE 111
           ND EL  EED+++ D + E +E
Sbjct: 581 NDSELAYEEDVEIGDEEEEDEE 602


>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin protein.
          Length = 1346

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 197  PTSKHTRTQHIAQNTMKHYTQFT 129
            P  KHT T H+A+  ++H+++ T
Sbjct: 1053 PVYKHTLTYHLAEYMVEHFSEGT 1075


>AY150816-1|AAN61050.1|  912|Caenorhabditis elegans ADR-1D protein.
          Length = 912

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 294 YEQIKKTRNVKIYLCVKKLRNLNHLQRQVTYLSD 193
           YEQIK+T++++++    KL   N L  Q   LS+
Sbjct: 708 YEQIKETKSLRVHCTADKLFKWNTLGIQGAPLSN 741


>AY150815-1|AAN61049.1|  964|Caenorhabditis elegans ADR-1C protein.
          Length = 964

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 294 YEQIKKTRNVKIYLCVKKLRNLNHLQRQVTYLSD 193
           YEQIK+T++++++    KL   N +  Q   LS+
Sbjct: 779 YEQIKETKSLRVHCTADKLFKWNTMGIQGALLSN 812


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,033,062
Number of Sequences: 27780
Number of extensions: 74112
Number of successful extensions: 282
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)