Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_J11
         (373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    26   2.2  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    26   2.2  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   3.8  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       25   3.8  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   5.0  
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom...    24   6.7  
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    24   6.7  
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    24   8.8  

>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 221 PRPDPFYQPHKPNQPDHHITPNRTNDLSSV 310
           P  D FY PH P +      PN    LS+V
Sbjct: 590 PLHDKFYVPHSPPKYTMETYPNNVLSLSTV 619


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 205 HYHISATT*SVLPTS*TKPTRS 270
           H+H S+++ +V PTS T PT S
Sbjct: 122 HHHSSSSSYAVSPTSPTSPTSS 143


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 232  SVLPTS*TKPTRSSHNPQPHQRSVLGPR 315
            S++P    KPT+  H   P  + +L PR
Sbjct: 997  SIIPIKPNKPTKPDHLVAPRVKPLLPPR 1024


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 191 MLPNGTITYQPRPDPFYQPHKPNQPDHHITPNRT 292
           M P  T   QP+   F QP + N P   + P RT
Sbjct: 461 MQPQRTGMMQPQRTGFSQPFESNNPFPVMQPQRT 494


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 176 YEIMVMLPNGTITYQPRPDPFYQPHKPNQPDH-HITPNRTNDLSSVQGGHVNGQNTQR 346
           Y    M P   ++Y     P Y  +K  QP   +++ +  ND   + GGH N  N Q+
Sbjct: 746 YAFPPMYPIPYVSYGYGTMP-YNNNKFGQPQQGYMSQSGFNDFPPIFGGHSNVYNRQQ 802


>SPAC3F10.10c |map3||pheromone M-factor receptor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 302 TDRWCGWGLCD 270
           T RW G+GLCD
Sbjct: 62  TIRWMGYGLCD 72


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +2

Query: 215 YQPRPDPFYQPHKPNQPDHHITPNRTND 298
           Y P   P      PN  ++H TPN  N+
Sbjct: 109 YTPSTRPASHTEAPNDFENHETPNTENN 136


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 245 PHKPNQPDHHITPNRTNDLSSVQ 313
           P K  QP  HI  N  +DL SV+
Sbjct: 327 PQKIIQPQRHIQKNIVDDLFSVK 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,057,016
Number of Sequences: 5004
Number of extensions: 18682
Number of successful extensions: 60
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)