Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_J11
(373 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0121 + 13078163-13078690,13078957-13078977 29 1.2
04_03_1022 - 21778315-21779007 29 1.2
06_02_0346 - 14837982-14838122,14838208-14838327,14838411-148385... 29 1.5
03_03_0156 + 14939355-14939435,14939559-14939624,14940331-149404... 27 4.7
10_01_0354 - 3887790-3890204 26 8.2
07_03_0573 + 19614899-19617155,19617384-19617476,19618103-19618125 26 8.2
04_03_0904 + 20717005-20718087 26 8.2
04_03_0689 + 18746735-18748296,18748401-18748485 26 8.2
04_01_0150 + 1741639-1741742,1742432-1742543,1742856-1743594,174... 26 8.2
>10_07_0121 + 13078163-13078690,13078957-13078977
Length = 182
Score = 29.1 bits (62), Expect = 1.2
Identities = 16/66 (24%), Positives = 25/66 (37%)
Frame = +2
Query: 176 YEIMVMLPNGTITYQPRPDPFYQPHKPNQPDHHITPNRTNDLSSVQGGHVNGQNTQRFPE 355
Y + +LP I +P P P DHH + +D + GG Q P+
Sbjct: 79 YMLEHLLPTAAIPPEPMTPKKSSPAPPPAVDHHHRLSPPHDAAGYNGGIQAQHENQHHPQ 138
Query: 356 CSEPCI 373
+P +
Sbjct: 139 EPQPAL 144
>04_03_1022 - 21778315-21779007
Length = 230
Score = 29.1 bits (62), Expect = 1.2
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +2
Query: 197 PNGTITYQPRPDPFYQPHKPNQPDHHITPNRTNDLSSVQGGH 322
P T P P P+ PH P+ HH P S+ GGH
Sbjct: 71 PPHTPAPAPAPGPYIPPHHPH---HHHPPTPAPAPSTTPGGH 109
>06_02_0346 -
14837982-14838122,14838208-14838327,14838411-14838564,
14838793-14838866,14838962-14839095,14839207-14839326,
14843174-14843308,14843842-14843976,14844343-14845003,
14845103-14845264,14845348-14845510,14880834-14881021
Length = 728
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +2
Query: 185 MVMLPNGTITYQPRPDPFYQPHKPNQPDHHITPNRTNDLSSVQGGHVN 328
++ + G QP PDP QP +QPD+ P + Q H +
Sbjct: 270 IISIIRGESRTQPPPDPQPQPASHSQPDNQHGPVASQTSEEAQDHHTH 317
>03_03_0156 +
14939355-14939435,14939559-14939624,14940331-14940414,
14940796-14940875,14941313-14941358,14941456-14941566,
14942224-14942290,14942615-14942630,14942871-14942931,
14943015-14943145,14943243-14943360,14944053-14944176,
14944517-14944618,14944717-14944785,14946250-14946329
Length = 411
Score = 27.1 bits (57), Expect = 4.7
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 221 PRPDPFYQPHKPNQPDHHITPNRTNDLSSVQGGHVNGQNTQRFP 352
P PDPF HK + +H +R +L+S Q V GQ P
Sbjct: 362 PEPDPFEPRHK--KRNHIPLMSRQTELASKQCSIVKGQKVLSSP 403
>10_01_0354 - 3887790-3890204
Length = 804
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 359 NIQGNVVCFVR*HGLLGPRTDR 294
+I G ++ FV HGL+G ++DR
Sbjct: 12 SIIGKIILFVSEHGLMGIKSDR 33
>07_03_0573 + 19614899-19617155,19617384-19617476,19618103-19618125
Length = 790
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 206 TITYQPRPDPFYQPHKPNQP 265
T T PRP P Y P +P+ P
Sbjct: 58 TTTAAPRPFPDYSPPRPDSP 77
>04_03_0904 + 20717005-20718087
Length = 360
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +2
Query: 197 PNGTITYQPRPDPFYQPH-KPNQP 265
PN TY+P P P Y+P KPN P
Sbjct: 236 PNPPPTYKPAP-PTYKPQPKPNPP 258
>04_03_0689 + 18746735-18748296,18748401-18748485
Length = 548
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +2
Query: 197 PNGTITYQPR-PDPFYQPHKPNQPDHHITP 283
PN T T QPR P P Q P P H+ P
Sbjct: 9 PNSTPTPQPRPPQPQQQGGSPATPLGHLRP 38
>04_01_0150 +
1741639-1741742,1742432-1742543,1742856-1743594,
1743724-1743776,1743914-1743991,1744107-1744405,
1744660-1745476,1745576-1745842,1745987-1746181,
1746287-1746372,1746469-1746657,1747138-1747207,
1747399-1747552,1747706-1747832,1749158-1749254
Length = 1128
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 218 QPRPDPFYQPHKPNQPDHHITPNRTNDLSSVQGGHVNGQNTQR 346
QP+ Q K P + + N T+ L+ +QG V+GQN Q+
Sbjct: 173 QPQSQQHQQQAKQLHPTNVVGYNPTS-LNQIQGQSVSGQNFQQ 214
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,076,973
Number of Sequences: 37544
Number of extensions: 133414
Number of successful extensions: 516
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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