Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_J10
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    30   0.27 
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    29   0.62 
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    29   0.82 
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    28   1.1  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    28   1.4  
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc...    27   1.9  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    26   5.8  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   5.8  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    26   5.8  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   7.6  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   7.6  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   7.6  

>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
 Frame = +2

Query: 167 DANNGVDKEIVLVTDDYEHGIKYEINPITTDDMLNEVAC-LESYGTLQHPIQMKEILPST 343
           D +N V+++  L+ D+       + N    + ML+ V   + +Y  +      +EI PS 
Sbjct: 378 DMSNVVNEDENLIIDEIPSNTPQKGNFKLVEYMLDHVLPKVITYCVVAFEFSSEEI-PSN 436

Query: 344 DRNNFKQMENESVNDEDTIKFFCNVIDGNSDARHTLWAKYDTKIQTW 484
             N F+++ + ++   + I + CN +   S    T W     KI  W
Sbjct: 437 LSNYFQEVGDRTIECLNNISWSCNSVFVESSEAFTRWKLSAGKILQW 483


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 5/132 (3%)
 Frame = +2

Query: 110 TSGVIEDYTVWKNLSSSRIDANNGVDKEIVL--VTDDYEHGIKYE-INPITTDDMLNEVA 280
           T+ V++  T W N    ++ A+ G D +I++  V +DY     YE ++PI      +   
Sbjct: 81  TAAVLD--TDW-NPFHDQVLASGGDDSKIMIWKVPEDYTVMEPYEDVHPIAELKGHSRKV 137

Query: 281 CLESYGTLQHPIQMKEILPSTDRNNFKQMENESVNDEDTIKF--FCNVIDGNSDARHTLW 454
            L  Y    HP     +  S+  N  K  + E      ++K    C  +  N+D    + 
Sbjct: 138 GLVQY----HPTAANVLASSSADNTIKLWDCEKGVAHVSLKMDVMCQSMSFNADGTRLVT 193

Query: 455 AKYDTKIQTWKP 490
              D K++ W P
Sbjct: 194 TSRDKKVRVWDP 205


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +2

Query: 59  NLKWPDSYTFEATRVSLTSGVIEDYTVWKNLSSSRIDANNGVDKEIVLVTDDYEHGIKYE 238
           +L+  DS T       L   +  +  +   L   RID N  +  ++++  DD EH I  +
Sbjct: 179 DLEVNDSLTNAEKNRKLNVNLTYNEVLCSMLQRYRIDPNTWMSYDLLINYDDKEHAIPMD 238

Query: 239 INPI 250
           + P+
Sbjct: 239 VKPL 242


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 277 HFVKHIVCSYRVYLILDAVFIVICYQNNFL 188
           H    + C+Y V  ILDA  I +C+ +  L
Sbjct: 136 HIFSRLTCAYFVLSILDASLIYLCFTSEHL 165


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 516 LYFNNSYLTGFHVCIFVSYLAHKVCL 439
           +YF+  +L GFH  +      HK+CL
Sbjct: 145 VYFDEEWLNGFHEKVIQKTYDHKLCL 170


>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 333 CLRLIETILNRWKMNRSMMRTL 398
           CL+ I T  N W+ NR ++R +
Sbjct: 312 CLQPISTSFNEWRQNRELLRDI 333


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 296 GTLQHPIQMKEILPSTDRNNFKQMENESVNDEDT 397
           G +  P + KE +P T RN+ K +E    +  +T
Sbjct: 248 GCIYSPAEAKEHVPKTLRNSNKDLEMTDASSSET 281


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 347 RNNFKQMENESVNDEDTIKFFCNVIDGNSDARHTLWAKYDT 469
           R  F+   N  V+D+DT+     +I   + +R  L + YD+
Sbjct: 11  RGLFEDDANSYVSDDDTMSSLTRMIYDKNSSRDALHSDYDS 51


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = +2

Query: 95  TRVSLTSGVIEDYTVWKNLSSSRIDANNGVDKEIVLVTDDYEHGIKYEINPITTDDMLNE 274
           ++ S+TSGVIE Y + K + + +   N G  K++V  +   +  +  E   +T D  + E
Sbjct: 761 SKASITSGVIESYGLHKRVEAVKSTRNIG-KKDMVYNSYMPKMTVDPEAYTVTADGKVME 819


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -2

Query: 288 SRHATSLSISSVVIGFISYLMPCS*SSVTRTISLSTPLLAS 166
           S  ATS S++S  +   +     S SS++ T+S STPL +S
Sbjct: 219 SNSATSSSLASSSLNSTTSATATS-SSISSTVSSSTPLTSS 258


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 122 IEDYTVWKNLSSSRIDANNGVDKEIVLVTDDYEHGIKYE 238
           I  +T  +  +++    N+G+D   V  T+D+E  I Y+
Sbjct: 246 ISTHTKKRRRTANTSQRNDGLDLNTVFTTNDWEKNIIYD 284


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/56 (21%), Positives = 27/56 (48%)
 Frame = -2

Query: 651 CISDCISEGFSVQLYSSVLNTESSMFKLKL*KVQTSFSSRAPNQILYFNNSYLTGF 484
           C++  +   +   L   V+  + ++FK K    +  F+   P Q+++F ++  T F
Sbjct: 783 CVASTLIYHYCSMLGCRVIRMQGTLFKKKDALFEKCFAILIPGQLVFFQDATRTKF 838


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,051,578
Number of Sequences: 5004
Number of extensions: 68549
Number of successful extensions: 234
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)