Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_J10
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0168 - 12983476-12983780,12984180-12984684                       31   0.85 
04_01_0241 - 3138951-3139511                                           31   0.85 
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    29   3.4  
04_04_0877 + 29018168-29018279,29019013-29019230,29019333-29019713     29   4.5  
10_01_0186 - 2077298-2078731                                           28   6.0  
11_06_0211 + 21305535-21305895,21306512-21306761,21307543-213076...    28   7.9  
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384...    28   7.9  
02_02_0652 - 12651163-12653210,12653327-12653627                       28   7.9  

>09_03_0168 - 12983476-12983780,12984180-12984684
          Length = 269

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 521 WLGALDENEVWTFYNFNLNIDDSVFNT--EEYNCTEKPSEIQSEIQNSITID 670
           +L  LD N V      + N+DDS +NT  E+Y+  ++  E+     NS+  D
Sbjct: 10  YLALLDPNIVPVLLFVDYNVDDSEYNTDGEDYSIDDEGEELDHASNNSLDED 61


>04_01_0241 - 3138951-3139511
          Length = 186

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +2

Query: 116 GVIEDYTVWKNLSSSRIDANNGVDKEIVLVTDDYEHGIKYEINPITTDDMLNEVAC 283
           G I+DY +W +    ++D +   DKE  L  DD E+        IT D  L E+ C
Sbjct: 67  GFIDDYVIWTHHDKHQVDPD---DKEDWLHVDDLEYADGDSCGDITID--LEEMLC 117


>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 419 IDGNSDARHTLWAKYDTKIQTWKPVKYELLKY 514
           I+ NS  RH   A Y+ K+++W   KY+ L +
Sbjct: 169 IEENSKPRHRFMASYEQKVESWDK-KYQYLLF 199


>04_04_0877 + 29018168-29018279,29019013-29019230,29019333-29019713
          Length = 236

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -2

Query: 489 GFHVCIFVSYLAHKVCLASELPSITLQKNLIVSSSLTDSFSICLKLFLSVEGKIS 325
           GF +   +    H  C  S + S TL+ N+ V     D FSI    F+  + KIS
Sbjct: 25  GFKILSQIRRQDHDCCTFSAMAS-TLEANVRVQHGRNDQFSIPHLQFIDAQSKIS 78


>10_01_0186 - 2077298-2078731
          Length = 477

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
 Frame = -2

Query: 672 GSMVMEFCISDCISEGFSVQLYSSVLNTESSMFKLKL*KV----QTSFSSRAPNQILYFN 505
           GS++    ++D +      QL++SVL     M K  L K     +       P  I  F 
Sbjct: 334 GSLITANVVADLLRRNHDFQLWNSVLQRFKEMVKSNLSKYGEHPKDIIEKEHPIDITRFG 393

Query: 504 NSYLTGFHV 478
           +SY T  H+
Sbjct: 394 SSYRTRLHL 402


>11_06_0211 +
           21305535-21305895,21306512-21306761,21307543-21307652,
           21308836-21309067,21310233-21310603,21311434-21311507,
           21311727-21311880,21312251-21312434,21313066-21313291,
           21313704-21314135,21314399-21314456,21314748-21314829,
           21315350-21315421,21316594-21316737,21317379-21317457,
           21318023-21318105,21318198-21318252,21318488-21318778
          Length = 1085

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
 Frame = +2

Query: 545 EVWTFYNFN------LNIDDSVFNT----EEYNCTEKPSEIQSEIQNSITID 670
           EVW  +++N      ++ D S FNT    + YNCT   + +  E  +S TID
Sbjct: 593 EVWLAFHWNCSEDVDVHKDHSHFNTILKPDSYNCTSSNTTLPDENHDSDTID 644


>03_01_0510 +
           3841630-3844089,3844235-3844358,3844641-3844786,
           3844861-3844958,3845313-3845502
          Length = 1005

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 657 EFCISDCISEGFSVQLYSSVLNTESSMFKLKL*KVQTS 544
           + C SD +      +L+   L TES +FKLKL KV  S
Sbjct: 391 DLCFSDPLD--LHRRLHHEYLETESDLFKLKLQKVVAS 426


>02_02_0652 - 12651163-12653210,12653327-12653627
          Length = 782

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +2

Query: 26  SYARGTNGAAQNLKWPDSYTFEATRVSLTSGVIEDYTVWKNLSSSRIDANNGVDKEIV 199
           SYA  T+GA +++       F AT+ SL S            S+   D   G+DKE++
Sbjct: 123 SYATTTSGA-KSIPAATERVFPATKASLASSTSSTTMTTPAPSTETKDVGAGMDKEVL 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,978,717
Number of Sequences: 37544
Number of extensions: 373337
Number of successful extensions: 889
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)