Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_J10
         (679 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ289390-1|CAB93272.1|  109|Homo sapiens immunoglobulin heavy ch...    30   8.7  
AB209245-1|BAD92482.1|  170|Homo sapiens Hypothetical protein FL...    30   8.7  

>AJ289390-1|CAB93272.1|  109|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 109

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +2

Query: 311 PIQMKEILPSTDRNNFKQMENESVNDEDTIKFFCNVIDGN-SDARHTLWAKYDTKIQT 481
           P++ +  +   D  N   ++  S+  EDT  ++C  + G+ SD    LW +    + T
Sbjct: 52  PVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTTVGGSYSDWYFDLWGRGTWSLST 109


>AB209245-1|BAD92482.1|  170|Homo sapiens Hypothetical protein
           FLJ31471 variant protein.
          Length = 170

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -2

Query: 453 HKVCLASE--LPSITLQKNLIVSSSLTDSFSICLKLFL 346
           H  CL S   LPS T+Q+N+ ++  +  SF + L+ FL
Sbjct: 69  HIPCLISGPCLPSCTIQRNIFINYFVNASFLVALETFL 106


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,987,863
Number of Sequences: 237096
Number of extensions: 2176226
Number of successful extensions: 5158
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5155
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)