Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_J07
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    31   0.12 
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    27   1.9  
SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.5  

>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 383 MFPRHRFHNHFVQESKI 333
           +FP+HRF NH V E KI
Sbjct: 107 IFPKHRFRNHLVDEGKI 123


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 240 APVSQVPRPHSMASRPWSKPCLLHRIKTSQLNL*FL 347
           +PV+    P S+  R  S P L HR+  SQ N  FL
Sbjct: 50  SPVTPQRNPISLFVRGLSHPFLRHRLSKSQFNEWFL 85


>SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -2

Query: 168 SILIQRLQLYLVVINKFEQLWLIQVSRFLVK 76
           SIL++  Q Y  ++++FE + L+ +S F V+
Sbjct: 220 SILMRSNQKYYDILSRFEDVQLVDISEFPVQ 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,267,203
Number of Sequences: 5004
Number of extensions: 44724
Number of successful extensions: 158
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)