Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_J07
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32840-1|CAA83679.1|  584|Caenorhabditis elegans Hypothetical pr...    32   0.33 
DQ340623-1|ABC65811.1|  584|Caenorhabditis elegans chondroitin p...    32   0.33 
AF038606-5|AAB92024.2|  352|Caenorhabditis elegans Hypothetical ...    30   1.3  
U58756-8|AAY44005.1|  183|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>Z32840-1|CAA83679.1|  584|Caenorhabditis elegans Hypothetical
           protein C07G2.1a protein.
          Length = 584

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
 Frame = +2

Query: 257 TSTALDGEPALVETLPSAQDQDVTIKSLIPAQSDYESDGEETFPELEV--------HELV 412
           T+T +  EP +VET     ++  T   +      YE + EET  E EV         E+V
Sbjct: 425 TTTTVGYEPEVVETTVPYVEETTTAADVPTTTVGYEPEVEETTTEAEVPTTTVGYESEVV 484

Query: 413 DLPXXXXXXXXXXXXVVLLDASTLGDVPAVYKVPQPAPHQMP 538
           +               ++++++T  DVP    VP     ++P
Sbjct: 485 ETTAADIPTTTIGYAPIVVESTTAADVPTT-TVPAETTTEVP 525


>DQ340623-1|ABC65811.1|  584|Caenorhabditis elegans chondroitin
           proteoglycan-1 protein.
          Length = 584

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
 Frame = +2

Query: 257 TSTALDGEPALVETLPSAQDQDVTIKSLIPAQSDYESDGEETFPELEV--------HELV 412
           T+T +  EP +VET     ++  T   +      YE + EET  E EV         E+V
Sbjct: 425 TTTTVGYEPEVVETTVPYVEETTTAADVPTTTVGYEPEVEETTTEAEVPTTTVGYESEVV 484

Query: 413 DLPXXXXXXXXXXXXVVLLDASTLGDVPAVYKVPQPAPHQMP 538
           +               ++++++T  DVP    VP     ++P
Sbjct: 485 ETTAADIPTTTIGYAPIVVESTTAADVPTT-TVPAETTTEVP 525


>AF038606-5|AAB92024.2|  352|Caenorhabditis elegans Hypothetical
           protein C04C3.3 protein.
          Length = 352

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 209 LALQRLWNLTRARLAGTSTALDGEPALVETLPSAQDQDV 325
           +AL++  NL  ARLAGTST       + + L  A D+++
Sbjct: 1   MALRKCGNLFVARLAGTSTRAASTMTVRDALNQAMDEEI 39


>U58756-8|AAY44005.1|  183|Caenorhabditis elegans Hypothetical
           protein F58F9.11 protein.
          Length = 183

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
 Frame = -1

Query: 379 FLAIAFIITLCRNQRFNCDVLILCRRQGFDQ---GRLAIECGRGTCETGACQIP 227
           F+ +AF+  +CR  R  C + + C   G          +EC   +C    C IP
Sbjct: 5   FILVAFLAGICRADRSTCSINVTCPTGGLWSEWADAEGVECS-ASCAQRTCCIP 57


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -1

Query: 268 CGRGTCETGACQIP*TLEGQRSLLIS*FHGWASEHLDSKTSV 143
           C R T  T   + P  LEG++   IS FH     H +SK  V
Sbjct: 130 CKRQTRSTDKAKQP-ALEGKKKKKISFFHNLFKSHSESKNQV 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,672,406
Number of Sequences: 27780
Number of extensions: 260555
Number of successful extensions: 805
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)