Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_J02
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy...    26   1.3  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    26   1.8  
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    23   9.4  

>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 123 KSILVPTPFQCLISNFWACSKAHNYCVINS 212
           K +  PTP  CL  N+    KA  YC I S
Sbjct: 158 KIVWEPTPESCLPENWHILQKALKYCDIFS 187


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 126 SILVPTPFQCLISNFWACSK 185
           ++ + T F CL+   WACSK
Sbjct: 19  ALAIMTGFPCLMYYLWACSK 38


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 6   IDGTSMAIAAHTMFLHCSSHKQNTM*NEATLKINQVLPAKSILVPTPFQCLISNFWA-CS 182
           I+  S+AIA     +   S  +    NE  +  ++V     +   + F CL  + W+ C 
Sbjct: 20  IEDFSLAIANRFKQMGSHSDSEVDWDNEEEVWEDEVHEFCCLFCDSTFTCL-KDLWSHCK 78

Query: 183 KAHNY 197
           +AHN+
Sbjct: 79  EAHNF 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,104,086
Number of Sequences: 5004
Number of extensions: 17061
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)