Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_I23
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328...    31   0.70 
12_02_0503 - 19756561-19757991,19758606-19759967                       28   5.0  
10_08_0825 + 20831170-20831349,20831380-20831547,20831627-208316...    28   6.6  
03_05_0006 + 19527479-19528769,19529693-19530105,19530220-195304...    27   8.7  

>05_03_0604 -
           16132173-16132391,16132488-16132556,16132824-16132898,
           16132981-16133113,16133188-16133297,16133360-16133407,
           16133657-16133983,16135006-16135233,16135360-16135689,
           16135780-16136586
          Length = 781

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 485 EKNRVYIKILNIHRNQYLKLEIKSDVDGDHKAFGADADDTYRHQW 351
           + +R YI IL  HRN+ LK+E+      D    G     +++  W
Sbjct: 61  DNSRHYIVILGSHRNKRLKIEVDGKTVVDVAGIGLCCSSSFQSYW 105


>12_02_0503 - 19756561-19757991,19758606-19759967
          Length = 930

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 185 QCAIRNVQDCRRLHYVPTVVYRHHCRRAFQVSKVYCTVCCRFKIAFP 325
           Q +I NV+ C  L  +   +   HCR    V  V   VCC   I+ P
Sbjct: 694 QLSILNVESCNLLVSLNGFLQEEHCR----VLTVLSLVCCHMLISLP 736


>10_08_0825 +
           20831170-20831349,20831380-20831547,20831627-20831698,
           20831997-20832075,20832182-20832375,20832469-20832558,
           20832851-20832940,20833196-20833282,20833477-20833560,
           20833690-20833809,20834096-20834103,20834443-20834575,
           20835044-20835125,20835330-20835496,20836006-20836493,
           20836551-20836638,20836716-20836818,20836932-20837083,
           20837191-20837316,20837459-20837529,20837691-20837753,
           20838418-20838490,20838972-20839040,20839180-20839257,
           20839434-20839484,20839586-20839696
          Length = 1008

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -3

Query: 178 FSKILQ*IEVQNYNLFRNMCHIMLSMYHCI 89
           +++++Q +E+ N  LF+ +C +    YH I
Sbjct: 694 YARLMQKLEIVNVELFKGICQLFGIFYHYI 723


>03_05_0006 +
           19527479-19528769,19529693-19530105,19530220-19530430,
           19530531-19530768,19530847-19530997,19531240-19531542
          Length = 868

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 566 NDGDRASFGDGADKTSHRVSWRIYPLWEKNRV 471
           N+G    FG      S   +W I P W++N V
Sbjct: 481 NNGQVTPFGQRNHTASALNNWEITPFWQRNHV 512


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,866,166
Number of Sequences: 37544
Number of extensions: 297359
Number of successful extensions: 688
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)