Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_I22
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    27   0.81 
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe...    26   1.9  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   5.7  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    24   7.6  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    24   7.6  
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    24   7.6  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    24   10.0 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   10.0 

>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 0.81
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 60  LGPAGDTSNFGGRLDWSNKNANAALDISKQIGGRPNLSASGA 185
           L P G  S FGGR+  +    N A  +S  +    N+++S A
Sbjct: 427 LNPTGRPSRFGGRVRGNPLTMNKAGSVSDLLSTSTNMASSDA 468


>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 153 GGRPNLSASGAGVWNFDKNTRLSAGGSLSTMGRGKP 260
           G +PN +++  G+  F +N + + GGSL      KP
Sbjct: 69  GNKPNATSTTPGLNLFGQNPQAAPGGSLFGASTTKP 104


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 112 LDQSNLPPKFEVSPAGPKTLVP 47
           LD S L PKFEV+P     L P
Sbjct: 282 LDDSYLSPKFEVAPGQIVELSP 303


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 154 PICLLISRAAFAFLLDQSNLPPKFEVSPAGPKTLVPYACPSNLPRS 17
           P+    SR+A++   + SN PP+  V+P+  ++      PS+   S
Sbjct: 330 PMKFARSRSAYSTSANYSNTPPRNTVTPSTARSSTLSQNPSSSSNS 375


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 345 YLAQQIIKFKNHHIRFRNRAGI 280
           YL     + + HH  F N+AGI
Sbjct: 678 YLDDSYDELEQHHANFHNKAGI 699


>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 87  SLRCRLPDPKPW 52
           S  CRLP P+PW
Sbjct: 265 SFTCRLPLPEPW 276


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 256 FPRPIVLSDPPADKRVFLSKFHTPAPLADRFGLPP 152
           +P+P  L D    K  F S  ++PAP   R  LPP
Sbjct: 342 YPQPSNL-DAINAKTYFQSSSNSPAPYVYRNNLPP 375


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 362  KYILFNIWHNRL*SLKTTTSALEIVLELTLERD 264
            K  + N+W++ L  L T  S   I+ +L  ERD
Sbjct: 3756 KQYIPNVWNDVLKKLITILSPKVIITKLDFERD 3788


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,649,099
Number of Sequences: 5004
Number of extensions: 33916
Number of successful extensions: 122
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)