Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_I22
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81097-10|CAB03169.1|  492|Caenorhabditis elegans Hypothetical p...    28   2.1  
DQ384615-1|ABD34785.1|  492|Caenorhabditis elegans ERGIC-53-like...    28   2.1  
AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical ...    28   2.8  
U34661-1|AAA92006.1|  962|Caenorhabditis elegans ionotropic glut...    27   3.7  
L16559-2|AAA27933.3|  962|Caenorhabditis elegans Glutamate recep...    27   3.7  
U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z75550-10|CAA99927.2|  444|Caenorhabditis elegans Hypothetical p...    26   8.7  
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ...    26   8.7  

>Z81097-10|CAB03169.1|  492|Caenorhabditis elegans Hypothetical
           protein K07A1.8 protein.
          Length = 492

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 114 KNANAALDISKQIGGRPNLSASGAGVW 194
           ++ N  +DI+ +IGG+  + A G G+W
Sbjct: 83  ESENFQVDIALKIGGQGRVGADGLGIW 109


>DQ384615-1|ABD34785.1|  492|Caenorhabditis elegans ERGIC-53-like
           protein protein.
          Length = 492

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 114 KNANAALDISKQIGGRPNLSASGAGVW 194
           ++ N  +DI+ +IGG+  + A G G+W
Sbjct: 83  ESENFQVDIALKIGGQGRVGADGLGIW 109


>AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.3a protein.
          Length = 923

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = -3

Query: 277 PWNATSGFPRPIVLSDPPADKRVFLSKFHTPAPLADRFGLPPICLLISRAAFAFLLD 107
           P ++T   P P+ ++ PPA KR    +  T  P+  + G PP+   + R++ + L D
Sbjct: 49  PSSSTENEPPPVSVTSPPARKRAL--EESTVTPIQQKIG-PPV---LKRSSLSKLAD 99


>U34661-1|AAA92006.1|  962|Caenorhabditis elegans ionotropic
           glutamate receptor subunitprotein.
          Length = 962

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 269 VPRSIPARFLKRMWWFLNFII 331
           +PRSI  R     WWF   II
Sbjct: 657 LPRSISGRIASSAWWFFTMII 677


>L16559-2|AAA27933.3|  962|Caenorhabditis elegans Glutamate receptor
           family (ampa)protein 1 protein.
          Length = 962

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 269 VPRSIPARFLKRMWWFLNFII 331
           +PRSI  R     WWF   II
Sbjct: 657 LPRSISGRIASSAWWFFTMII 677


>U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical
           protein F02E8.5 protein.
          Length = 578

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 120 ANAALDISKQIGGRPNLSASGAGVWNFDKNTRLSAGGS 233
           A+  LD++  +G  P+L ASG    +FDK  R   G S
Sbjct: 418 ASKVLDVATNMGASPSLFASG----HFDKKLRFYDGRS 451


>Z75550-10|CAA99927.2|  444|Caenorhabditis elegans Hypothetical
           protein T22C1.11 protein.
          Length = 444

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -3

Query: 253 PRPI-VLSDPPADKRVFLSKFHTPA-PLAD 170
           P PI +L +PP ++++     HTP  P+ D
Sbjct: 87  PEPIPILQEPPVEQKLISISLHTPTIPIED 116


>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
            isoform b protein.
          Length = 2692

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 205  LSKFHTPAPLADRFGLPPICLLISRAAFAFLLDQSNLPPK-FEVSP 71
            LS +  P PL    GLPP+         A+L   S+LPP+   VSP
Sbjct: 1992 LSDYPVPPPLGSLVGLPPMP--------AYLSSNSSLPPQHHHVSP 2029


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,462,175
Number of Sequences: 27780
Number of extensions: 210122
Number of successful extensions: 527
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)