Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_I20
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    29   0.65 
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    28   1.1  
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.1  
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s...    27   2.0  
SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc...    26   4.6  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    25   6.1  
SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.1  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   8.1  

>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 15  SQLFCIRQILYAVSCFQWRQRVISWSREARRP 110
           S  + I Q ++ + CF+WR+  +S   E+  P
Sbjct: 449 SVFYAINQSIFYIFCFRWRELCVSDESESMEP 480


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 347 GSRCSSRSCTIPHSNITHRVSISRTQRRGRDTRTPPARTSPSAAMDTTSW 496
           GS  +S S  +P SN+  + + +R        + P     P+A+ ++TSW
Sbjct: 324 GSMTNSTSTDLPTSNLPSQNAPARPVEPSPSIQPPNLLNLPTASPESTSW 373


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +2

Query: 356 CSSRSCTIPHSNITHRVSISRTQRRGRDTR-TPPARTSPSAAMDTTSWDVSRVKA 517
           CSS   +  HS+ T+R   S     G DT+   P   S    +D+T+  +   +A
Sbjct: 93  CSSIDASANHSSTTYREQRSYLMEEGLDTQPIVPREVSSGRELDSTNHTIGTERA 147


>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
           subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 279

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 195 DAGVRAQLPVRLEIRRADTVRGILHADRRGHQVYAVAVSLPRGRVPQLP 341
           DAG    +PV+L+   +  +R I+  +  G Q++   + LPR +    P
Sbjct: 147 DAGEPVLIPVKLKKHSSTNLRSIIRPNIEGVQIH--TIHLPRPKTEDKP 193


>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 40  FCMLYRAFNGDSESSAGVERREDPGVXXXXXXXXXXRYEGP 162
           F + + AF+G    + GVER +  G+          + EGP
Sbjct: 48  FSLSFLAFDGPGALNHGVERSKREGILELTYNFGTEKKEGP 88


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 273 DRRGHQVYAVAVSLPRGRV 329
           ++RGH +YA+AV+L  G +
Sbjct: 386 NKRGHPIYAIAVTLLFGSI 404


>SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 270 REVSLVRYLHDVSPDGLVVAREHRRRVLDACRTWRRR 160
           R V   R + D   + + +A  H+RRV D   +W +R
Sbjct: 115 RTVRAGRPVLDEDDEEMNIATPHKRRVYDLNSSWMKR 151


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 66  WRQRVISWSREA 101
           WR+RV+ WS+EA
Sbjct: 622 WRRRVLRWSQEA 633


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,242
Number of Sequences: 5004
Number of extensions: 46903
Number of successful extensions: 148
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)