Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_I20
         (581 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su...    34   0.42 
AL133561-1|CAB63715.1|  580|Homo sapiens hypothetical protein pr...    31   2.2  
AL117481-1|CAB55954.1|  319|Homo sapiens hypothetical protein pr...    31   2.2  
AY166859-1|AAN87841.1|  546|Homo sapiens TGS2 protein.                 30   6.8  
AK128142-1|BAC87295.1|  209|Homo sapiens protein ( Homo sapiens ...    30   6.8  
D87446-1|BAA13387.1| 1805|Homo sapiens KIAA0257 protein.               29   9.1  

>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator subunit
            SRm300 protein.
          Length = 2296

 Score = 33.9 bits (74), Expect = 0.42
 Identities = 23/66 (34%), Positives = 30/66 (45%)
 Frame = +2

Query: 311  ITSRAGASAPRDGSRCSSRSCTIPHSNITHRVSISRTQRRGRDTRTPPARTSPSAAMDTT 490
            IT R   S     +R  SRS T P +    R   S   RR   +RTPPA+  P + + + 
Sbjct: 1977 ITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAQDQPRSPVPSA 2036

Query: 491  SWDVSR 508
              D SR
Sbjct: 2037 FSDQSR 2042


>AL133561-1|CAB63715.1|  580|Homo sapiens hypothetical protein
           protein.
          Length = 580

 Score = 31.5 bits (68), Expect = 2.2
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
 Frame = +2

Query: 317 SRAGASAPRDGSRCSSRSCTIPHSNITHRVSISRTQRRGRDTRTPP----ARTSPSAAMD 484
           SRA  +  +  S  +        +    R S++RT  R   TRTPP     RT P A++ 
Sbjct: 411 SRASLTRTQSSSSLTRTPSMASLTRTPPRASLTRTPPRASLTRTPPRASLTRTPPRASLT 470

Query: 485 TTSWDVSRVKAEMFRIKLTRACS 553
            T   VS +K    R  LTR  S
Sbjct: 471 RTPSMVS-LKRSPSRASLTRTPS 492


>AL117481-1|CAB55954.1|  319|Homo sapiens hypothetical protein
           protein.
          Length = 319

 Score = 31.5 bits (68), Expect = 2.2
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
 Frame = +2

Query: 317 SRAGASAPRDGSRCSSRSCTIPHSNITHRVSISRTQRRGRDTRTPP----ARTSPSAAMD 484
           SRA  +  +  S  +        +    R S++RT  R   TRTPP     RT P A++ 
Sbjct: 150 SRASLTRTQSSSSLTRTPSMASLTRTPPRASLTRTPPRASLTRTPPRASLTRTPPRASLT 209

Query: 485 TTSWDVSRVKAEMFRIKLTRACS 553
            T   VS +K    R  LTR  S
Sbjct: 210 RTPSMVS-LKRSPSRASLTRTPS 231


>AY166859-1|AAN87841.1|  546|Homo sapiens TGS2 protein.
          Length = 546

 Score = 29.9 bits (64), Expect = 6.8
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +2

Query: 329 ASAPRDGSRCSSR-SCTIPHSNITHRVSISRTQRRGRDTRTPPARTSPSAAMDTTSWDVS 505
           ASA R GS  + R     PHSN+  + S+  T  RG         +S  A +D    + S
Sbjct: 103 ASASRGGSSAARRRGQRAPHSNLPRKDSLRPTMHRGGQPLKKRRGSSKMAELDQLPDESS 162

Query: 506 RVKA 517
             KA
Sbjct: 163 SAKA 166


>AK128142-1|BAC87295.1|  209|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46263 fis, clone TESTI4025908. ).
          Length = 209

 Score = 29.9 bits (64), Expect = 6.8
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 1/106 (0%)
 Frame = +1

Query: 163 PTPCPARVEYATPVFARNYQSVWR-YVVQIPYEGYFTQTVEVTRCMQSRCHYLEGGCLSS 339
           P PC  R E A+      Y  + R Y  ++P +   T     T C Q +C   +   +SS
Sbjct: 93  PPPCVRR-ESASSTREHTYLHLHRVYAEKVPPQPESTHIFTCTVCTQRKCLLNQRAHISS 151

Query: 340 PRWVSLLVAELHYPSQQHNTQGEYQPYAETRPGHADSSSTDKPVSC 477
           P     +  E    +++H     +  YAE  P   + +    P  C
Sbjct: 152 P--PPCVRRESASSTREHTYLHLHCVYAEKVPPQPEGTQISSPPPC 195


>D87446-1|BAA13387.1| 1805|Homo sapiens KIAA0257 protein.
          Length = 1805

 Score = 29.5 bits (63), Expect = 9.1
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +2

Query: 299  SRGVITSRAGASAPRDGSRCSSRSCTIPHSNITHRVSISRTQRRGRDTRTPPARTSPSAA 478
            SRG   +   +S P  GS         PHS+ ++R S      R +++ +  +RTS  AA
Sbjct: 1115 SRGFCGAGGSSSRPSAGSHKQCGPSVHPHSSHSNRNSADVENVRAKNSSSTSSRTSAQAA 1174


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,351,522
Number of Sequences: 237096
Number of extensions: 1935460
Number of successful extensions: 9258
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9249
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6042162242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)