Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_I19
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    30   0.14 
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.25 
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.33 
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   0.43 
SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|...    28   0.57 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   0.99 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   1.7  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    26   1.7  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   2.3  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    25   3.0  
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    25   3.0  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    24   7.0  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    24   9.3  
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    24   9.3  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    24   9.3  

>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 29.9 bits (64), Expect = 0.14
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = +3

Query: 24  SHRAWTR-THAAIS--LQSRTVPTSSSTSYATKMETESLCSSLR 146
           S +AW R T  ++S  ++S+T+P   STSY  ++E E+ C   R
Sbjct: 43  SGQAWLRDTIPSLSNVVESQTIPEEDSTSYLNRLE-EAFCRDFR 85


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 29.1 bits (62), Expect = 0.25
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = +3

Query: 18  TVSHRAWTRTHAAISLQSRTVPTSSSTSYATKMETES--LCSSLRAVLSACKRRLIQSRL 191
           T+S   ++ T A+ +  S   P+SSST+ ++   + S  + SS+ + +S+     + S  
Sbjct: 128 TISGGIYSSTSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSS 187

Query: 192 VSLS*KTASLTLKPLTA 242
            S S   +S   K ++A
Sbjct: 188 ASSSGSISSADAKTVSA 204


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 28.7 bits (61), Expect = 0.33
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 224 AEAANSLSTAEKCGKYDELTTCVVNSLEQCSNPTPGNMA 340
           ++A N  S   +C KY +L +C V    QCSN    N A
Sbjct: 297 SKATNDCSGHGRCSKYGQLDSCYVC---QCSNSVVSNAA 332


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 28.3 bits (60), Expect = 0.43
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 374 SPFTNKSGRENRPYSPVSGYYTAPDC*PHKLSTHRICR 261
           SP+ +K  R+  PY P S  Y   +  PH +S  RI R
Sbjct: 478 SPYYHKRHRQISPYYPTSSVYGVYESPPH-MSDSRISR 514


>SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 106

 Score = 27.9 bits (59), Expect = 0.57
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +2

Query: 101 ICYKDGDRIALFIAESGPECLQEKADSIKTCFTKLKDSFPNAEAANS 241
           +CY+  D   + IA +GP+ ++ + D      T++ DSF     +N+
Sbjct: 11  VCYQPEDTTFIIIASNGPDVMRWRKDK-TVPLTEIVDSFQVFTTSNN 56


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.1 bits (57), Expect = 0.99
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = +3

Query: 87  SSSTSYATKMETESLCSSLRAVLSACKRRLIQSRLVSLS*KTASLTLKPLTAFLPPKS 260
           SS  SYA +    S+  S       C R L   ++ SL    + L  +   A LPPKS
Sbjct: 150 SSFLSYALRDGKPSVADSAIKSTRRCYRSLFCKKMDSLKKLVSFLLTETENAILPPKS 207


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 20/70 (28%), Positives = 35/70 (50%)
 Frame = +3

Query: 69  SRTVPTSSSTSYATKMETESLCSSLRAVLSACKRRLIQSRLVSLS*KTASLTLKPLTAFL 248
           S   PTS+S+SY   + + S+ SS  +  S+    L  S L + S  + S +    ++ L
Sbjct: 198 SSAAPTSTSSSY---LSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSL 254

Query: 249 PPKSAANTMS 278
              S+++T S
Sbjct: 255 SSSSSSSTAS 264


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = +2

Query: 158 CLQEKADSIKTCFTKLKDSFPNA-EAANSLSTAEKCGKYDELTTCVVNSLEQCSNPTPGN 334
           CL    D +   F KLKD+F    E     + +E    Y+ L+ C    L    +    N
Sbjct: 715 CLFNIQDDVFKTFEKLKDTFETVLENLPYFTNSETVDLYNLLSFCSAFILHSQVSMGLVN 774

Query: 335 MADSLFQIYS 364
           +A S  + Y+
Sbjct: 775 LASSFLETYA 784


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 69  SRTVPTSSSTSYATKMETESLCSSLRAVLS 158
           S +VP+SSS+ +++ M T  L SS   V S
Sbjct: 147 SSSVPSSSSSYHSSSMTTSGLSSSASIVSS 176


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = +2

Query: 14  LDGVSPCVDPNARGHLASVKNSTNQL-VDFICYKDGDRIALFIAESGPECLQEKADSIKT 190
           L+ VSP +DP     L ++++    L +    + +    ++      P   Q    +++T
Sbjct: 663 LNEVSPSLDPRISKSLRNLQDLYKLLAIRDTSFSNTTPSSISKLSIQPPTFQ-LFSTLET 721

Query: 191 CFTKLKDSFPNAEAANSLSTAEKC 262
            + +LKDS P  EAA+ +     C
Sbjct: 722 IYLELKDSMPPNEAADWMIATTSC 745


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 279 NSSYLPHF-SAVERLLAASALGKLSFSLVKQVLIESAFSCRHSGPLSAMNKA 127
           NS ++P+  S + RLL  S  G+   SL+  + IES  +   +  L   ++A
Sbjct: 406 NSGHIPYRESKLTRLLQQSLSGQSQISLLATISIESNHTMETTNTLKFASRA 457


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -1

Query: 382 GKGVPLRINLEERIGHIPRCRVTTLLQTVDHTSCQLIVFAALFG-GRKAVSGFSVREAV 209
           GKG+P+ I+ +E+I +IP      LL + ++   Q  V     G G K  + FS    V
Sbjct: 167 GKGIPIEIHDKEKI-YIPELIFGNLLTSSNYDDNQKKVTGGRNGYGAKLCNIFSTEFVV 224


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = -2

Query: 291 TQVVNSSYLPHFSAVERLLAASALGKLSFSLVKQVLIES----AFSCRHSGPLSAMNKAI 124
           TQ + ++Y P  S  ++    +  GKL +++   ++I++    +F+   S   S  N AI
Sbjct: 518 TQQIGATYFPIESIKQKTKVVNKKGKLQYNIPGLLIIDTPGHESFTNLRSRGTSLCNIAI 577

Query: 123 LSPSL*H 103
           L   + H
Sbjct: 578 LVIDIMH 584


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 318 LLHCSRLLTTQVVNSSY-LPHFSAVERLLAASALGK 214
           LLHC+RL   Q  N S  L      E+ + A+ +GK
Sbjct: 68  LLHCNRLRRIQDENGSLELQIIICPEKSMTANEIGK 103


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 68  VKNSTNQLVDFICYKDG 118
           VKN T   VDF+ YK G
Sbjct: 268 VKNGTKFSVDFLLYKKG 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,545,344
Number of Sequences: 5004
Number of extensions: 27250
Number of successful extensions: 105
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)