Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_I19
(382 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1465 - 27319377-27319405,27319936-27320101,27320336-273204... 29 0.94
09_04_0037 + 13992103-13992624,13993001-13993180,13993423-139936... 28 2.2
08_02_0839 + 21693348-21694853 28 2.9
06_01_0854 - 6490425-6491639 27 3.8
12_02_0280 - 16729000-16729678,16729948-16730039,16730072-167307... 27 5.0
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 27 5.0
03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376 27 5.0
02_05_0622 + 30437533-30437577,30437694-30438177,30438301-304383... 27 5.0
05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023 27 6.6
12_01_0561 + 4550119-4550265,4550716-4550791,4551601-4551668,455... 26 8.7
09_02_0339 + 7452967-7453068,7453281-7453339,7453889-7454701,745... 26 8.7
08_02_1443 + 27128839-27128989,27132064-27132125,27132386-27132430 26 8.7
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 26 8.7
>08_02_1465 -
27319377-27319405,27319936-27320101,27320336-27320444,
27320865-27321448
Length = 295
Score = 29.5 bits (63), Expect = 0.94
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 347 ENRPYSPVSGYYTAPDC*PHKLSTHRICRTF 255
+ R ++P+ GY C PHKL + IC F
Sbjct: 117 DTRQWAPLPGYPPPHPCYPHKLFSPTICLVF 147
>09_04_0037 +
13992103-13992624,13993001-13993180,13993423-13993691,
13994120-13995773
Length = 874
Score = 28.3 bits (60), Expect = 2.2
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 6 IHFWTVSHRAWTRTHAAISLQSRTVPTSSSTSYATKMETESL 131
+HFW + + T+A + L S VP S T YA + T +L
Sbjct: 709 LHFWVILFASLITTNAYVMLVSALVP-SYITGYAVVIATTAL 749
>08_02_0839 + 21693348-21694853
Length = 501
Score = 27.9 bits (59), Expect = 2.9
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 1/88 (1%)
Frame = +2
Query: 32 CVDPNARGHLASVKNSTNQLVDFICYKDGDRIALFIAESGPE-CLQEKADSIKTCFTKLK 208
C+D H + L DF Y G LF+ ESG E + ++ D+ + L
Sbjct: 180 CIDTWLLSHSTCPLCRRSLLADFSPYGGGCSPLLFVLESGSEGSISDRLDAASSAHLSLV 239
Query: 209 DSFPNAEAANSLSTAEKCGKYDELTTCV 292
EA AE K DE+ V
Sbjct: 240 ME-QEEEAEPEQKHAEAAEKADEVVVSV 266
>06_01_0854 - 6490425-6491639
Length = 404
Score = 27.5 bits (58), Expect = 3.8
Identities = 19/76 (25%), Positives = 32/76 (42%)
Frame = -1
Query: 331 PRCRVTTLLQTVDHTSCQLIVFAALFGGRKAVSGFSVREAVFQLSETSLD*ISLLLQALR 152
PR +TLL H L F+A K+ F+V E + + D + +++
Sbjct: 15 PRATASTLLSLRHHGLFSLTRFSAAAAAAKSAGHFAVEEYLVATCHLTPDQATKASKSIS 74
Query: 151 TALSDEQSDSVSIFVA 104
S + D+V F+A
Sbjct: 75 HLKSPSRPDAVVAFLA 90
>12_02_0280 -
16729000-16729678,16729948-16730039,16730072-16730772,
16731033-16731144,16731961-16731970,16732954-16733663
Length = 767
Score = 27.1 bits (57), Expect = 5.0
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -1
Query: 346 RIGHIPRCRVTTLLQTVDHTSCQLIVFAALFGGRKAVS--GFSVREAVFQLSETSLD 182
R+G + CRV L+ + + CQ F + + ++ GF VR QLS +L+
Sbjct: 405 RLGEVVSCRVHDLMLDIILSKCQQENFITVATKQSILNDRGFPVRRLCCQLSYENLE 461
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 27.1 bits (57), Expect = 5.0
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +2
Query: 131 LFIAESGPECLQEKADSIKTCFTKLKDSF--PNAEAANSLSTAEKCGK-YDELTTCVVNS 301
L IAE+ E L+ K D+ + KLK+S AE +S E G+ Y+++ T +
Sbjct: 506 LSIAEAELEDLRAKVDASERDVMKLKESIRIKEAEVDGHISEIETIGQAYEDMQTQNQHL 565
Query: 302 LEQCSN 319
L+Q ++
Sbjct: 566 LQQVAD 571
>03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376
Length = 798
Score = 27.1 bits (57), Expect = 5.0
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -2
Query: 300 LLTTQVVNSSYLP---HFSAVERLLAASALGKLSFSLVKQVLIE 178
+ + VNSS P H+S + LL S L + +F L+K + +E
Sbjct: 456 IFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVE 499
>02_05_0622 +
30437533-30437577,30437694-30438177,30438301-30438354,
30438565-30438789,30438891-30438943,30439591-30439714,
30439823-30440077,30440171-30440517,30440661-30441266,
30441504-30441546,30441624-30441757
Length = 789
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 327 GVGLLHCSRLLTTQVVNSSYLPHFSAVERLLAASALGKLSFSLVKQVL 184
G+GL+H +L V S +PH ER L +G + L + ++
Sbjct: 521 GIGLIHTELVLVFLCVKSVPVPHVQPEERFL-VGRIGPKEYRLYRVIV 567
>05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023
Length = 620
Score = 26.6 bits (56), Expect = 6.6
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Frame = +2
Query: 155 ECLQEKADSIKTCFTKLKDSFPNAEAANSLSTAE-----KCGKYDELTT-CVVNSLEQCS 316
EC ++K ++ +C D + E +SL +E +C D ++T C+VNS EQ
Sbjct: 31 ECTRKKKENRTSCCGDFTDPHQH-ECQSSLGNSEHLIEKQCDCEDIVSTYCLVNSEEQSF 89
Query: 317 NPTP 328
P P
Sbjct: 90 LPEP 93
>12_01_0561 +
4550119-4550265,4550716-4550791,4551601-4551668,
4551951-4552039,4552136-4552313,4553096-4553229,
4553307-4553520,4553601-4553785,4553930-4554025,
4554105-4554231
Length = 437
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 197 TKLKDSFPNAEAANSLSTAEKCGKYDE 277
+KL+ FPN + L+T E+ GK+++
Sbjct: 290 SKLRSYFPNLVSKEVLATKEELGKFND 316
>09_02_0339 +
7452967-7453068,7453281-7453339,7453889-7454701,
7455123-7455498,7455978-7456019
Length = 463
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 36 WTRTHAAISLQSRTVPTSSSTSYATKMET 122
++ HA I+L +RT P+SSS+ ++ T
Sbjct: 53 FSEAHALIALNARTTPSSSSSPSSSPTTT 81
>08_02_1443 + 27128839-27128989,27132064-27132125,27132386-27132430
Length = 85
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 9 HFWTVSHRAWTRTHAAISLQSRTVPTSSSTSYATKMETESL 131
+ W +S ++ H + LQ+ + P+SSS E E+L
Sbjct: 4 YVWKMSMKSQQSVHTSDKLQTSSCPSSSSVKKEVTDEEETL 44
>02_05_0672 +
30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 26.2 bits (55), Expect = 8.7
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -1
Query: 373 VPLRINLEERIGHIPRCRVTTLLQTVDHTSCQLIVFAALFGGRKAV 236
VP + E H+P T ++V H S QL VF + G + V
Sbjct: 627 VPSNATILEESSHVPCTSKCTEPRSVSHASQQLRVFQDIPDGERLV 672
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,381,399
Number of Sequences: 37544
Number of extensions: 186564
Number of successful extensions: 636
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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