Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_I18
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...   232   4e-62
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    29   0.83 
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    29   0.83 
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    28   1.1  
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb...    28   1.4  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    27   1.9  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    26   4.4  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   4.4  
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    26   4.4  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   7.7  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   7.7  

>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score =  232 bits (567), Expect = 4e-62
 Identities = 110/179 (61%), Positives = 136/179 (75%)
 Frame = +1

Query: 7   KIRDTAGQKGTGKWTGISALEYGVPVTLIGEAVFARCLSAIKDERVKASSTLPGSSYKFE 186
           KI D AGQKGTGKWT  +ALE G PV+LI EAVFARCLS++K ERV+AS  L G + KF 
Sbjct: 256 KILDAAGQKGTGKWTAQNALEMGTPVSLITEAVFARCLSSLKSERVRASKKLTGPNTKFT 315

Query: 187 GDKKEFLEHLRKALYASKLISYAQGXMLLREAAVVNKWNLNYGSIALMWRGGCIIRSVFL 366
           GDKK+ ++ L  ALYASK+ISYAQG ML+REAA    W LN   IALMWRGGCIIRSVFL
Sbjct: 316 GDKKQLIDDLEDALYASKIISYAQGFMLMREAAKEYGWKLNNAGIALMWRGGCIIRSVFL 375

Query: 367 GNIKDAFTKNPKLTNLLLDPFFSERISASQGSLRQVVAQAALVGVPAPAFSSGLAFYDG 543
            +I +AF ++P L ++L  PFF+  +  +Q   R+VVAQAA++G+P PA S+GL+FYDG
Sbjct: 376 KDITEAFREDPNLESILFHPFFTNGVEKAQAGWRRVVAQAAMLGIPVPATSTGLSFYDG 434



 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 33/52 (63%), Positives = 38/52 (73%), Gaps = 7/52 (13%)
 Frame = +2

Query: 542 GYRSNVLPANLLQAQRDYFGAHTYELLNKPGEY-------IHTNWTGHGGNV 676
           GYRS VLPANLLQAQRDYFGAHT+ +L +  +        IH NWTGHGGN+
Sbjct: 434 GYRSAVLPANLLQAQRDYFGAHTFRVLPEAADKSLPADKDIHINWTGHGGNI 485


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 590 DYFGAHTYELLNKPGEYIHTNW 655
           D F +HTY+ +N  GE+ +  W
Sbjct: 199 DGFSSHTYKFVNDKGEFYYCKW 220


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
 Frame = +1

Query: 193 KKEFLEHLRK----ALYASKLISYAQGXML-LREAAVVNKWNLNYGSIALMWRGGCII 351
           K +FL+++ K    A++A+   + A G    +R+  + N+W L  G++ L  +G C+I
Sbjct: 540 KSQFLKYVEKTAHRAVFATGQGASAVGLTASVRKDPITNEWTLEGGALVLADKGVCLI 597


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +3

Query: 39  RQMDWNQCIRIWGTCDTNWRSCIRSLSFSY 128
           +++ W   + +W T D  +  C+RS +  Y
Sbjct: 67  KKLSWEHLVLLWSTIDAFFSMCLRSCTIIY 96


>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +1

Query: 253 AQGXMLLREAAVVNKWNLNYGSIALMWRGGCIIRSVFLGNIKDAFTKNPKLTN-LLLDPF 429
           A G ML   + V  +  L   +  +M +GG +   +  G IKD    NP+  N  +LD F
Sbjct: 33  ATGDML--RSQVARQTELGKEAKKIMDQGGLVSDDIVTGMIKDEILNNPECKNGFILDGF 90


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -3

Query: 408 CQFWIFRKS--IFYIAEKNTSDNAASAPHESDTSVI*IPFIYHSSFTKQHXP 259
           C  WI  +   +FY    + S+ +   PHES+  VI +    H +F K   P
Sbjct: 252 CISWIENREFVVFYSPLTSLSNESDEPPHESECFVISVGMNGHFNFGKAGDP 303


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 301 SIYLPQQLHEATXTLAHKILICLHIKLCANVPR-ILSCRLQTCK 173
           SIYL + L +      HKI  CLH+  C NV + I+   L+T K
Sbjct: 63  SIYLAKMLEQH-----HKIPACLHL-TCTNVDKAIIDKALETAK 100


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 476 SLRLPSSEYRHPLSH 520
           S RLP+S+Y HP SH
Sbjct: 178 SCRLPASKYDHPRSH 192


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 674 HSHRDRSNLYGYIHRACSRVHTCARQNNPF 585
           H  R +S+ Y   ++ C R HT A Q   F
Sbjct: 93  HVSRSKSDTYYMNNKTCLRTHTSAHQPEEF 122


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = +3

Query: 303  FKLRKYRSHVARRLHY--QKCFSRQYKR--CFYEKSKIDKSAL-GSFLL 434
            FKLRK+RS+  R L    +K +  QY    C +   K D+  + G +LL
Sbjct: 3270 FKLRKWRSYFERLLSKVPKKQYLEQYSSFLCEFHHQKFDEIEVPGQYLL 3318


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 367  GNIKDAFTKNPKLTNLLLDPFFSERISASQGS 462
            G +    T+NP LTN  L+P   E I +S+ S
Sbjct: 1050 GGLNSYNTENPLLTNNTLEPSSVEAIVSSKDS 1081


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,913,918
Number of Sequences: 5004
Number of extensions: 59814
Number of successful extensions: 187
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)