Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_I18
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0080 + 644021-645463 157 6e-39
11_04_0333 + 16474011-16475478,16475622-16475641 152 3e-37
08_01_0713 - 6307737-6308789,6308886-6309056 28 6.0
02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,198... 28 6.0
06_01_0447 + 3159092-3159543,3159699-3159825,3160640-3161392 28 7.9
04_04_0961 + 29715938-29716034,29716918-29717133,29717438-297177... 28 7.9
>06_01_0080 + 644021-645463
Length = 480
Score = 157 bits (382), Expect = 6e-39
Identities = 78/179 (43%), Positives = 111/179 (62%), Gaps = 1/179 (0%)
Frame = +1
Query: 7 KIRDTAGQKGTGKWTGISALEYGVPVTLIGEAVFARCLSAIKDERVKASSTLPGS-SYKF 183
K+ D G KGTGKWT A E V I ++ +R LS +KDERV+A+ G S
Sbjct: 256 KVLDKTGMKGTGKWTVQQAAELSVAAPTIEASLDSRFLSGLKDERVEAAKVFQGDFSSNL 315
Query: 184 EGDKKEFLEHLRKALYASKLISYAQGXMLLREAAVVNKWNLNYGSIALMWRGGCIIRSVF 363
DK + +E +R+ALYASK+ SYAQG +++ ++ W+LN G +A +W+GGCIIR++F
Sbjct: 316 PVDKAQLIEDVRQALYASKICSYAQGMNIIKAKSMEKGWSLNLGELARIWKGGCIIRAIF 375
Query: 364 LGNIKDAFTKNPKLTNLLLDPFFSERISASQGSLRQVVAQAALVGVPAPAFSSGLAFYD 540
L IK A+ +N L NLL+DP F++ I Q + R+VV A GV P S+ LA++D
Sbjct: 376 LDRIKKAYDRNSDLANLLVDPEFAQEIMDRQAAWRRVVCLAINNGVSTPGMSASLAYFD 434
Score = 58.8 bits (136), Expect = 4e-09
Identities = 25/37 (67%), Positives = 30/37 (81%)
Frame = +2
Query: 545 YRSNVLPANLLQAQRDYFGAHTYELLNKPGEYIHTNW 655
YR + LPANL+QAQRDYFGAHTYE ++ PG + HT W
Sbjct: 436 YRRDRLPANLVQAQRDYFGAHTYERVDMPGSF-HTEW 471
>11_04_0333 + 16474011-16475478,16475622-16475641
Length = 495
Score = 152 bits (368), Expect = 3e-37
Identities = 79/184 (42%), Positives = 108/184 (58%), Gaps = 6/184 (3%)
Frame = +1
Query: 7 KIRDTAGQKGTGKWTGISALEYGVPVTLIGEAVFARCLSAIKDERVKASSTLP------G 168
KI D G KGTGKWT A E + I ++ R LS +KDERV A+ L G
Sbjct: 276 KILDKTGMKGTGKWTVQQAAELAIAAPTIAASLDGRYLSGLKDERVAAAGVLEAEGMPSG 335
Query: 169 SSYKFEGDKKEFLEHLRKALYASKLISYAQGXMLLREAAVVNKWNLNYGSIALMWRGGCI 348
DKK ++ +R+ALYASK+ SYAQG LLR +V WNLN +A +W+GGCI
Sbjct: 336 LLETINVDKKMLVDRVRQALYASKICSYAQGMNLLRAKSVEKGWNLNLAELARIWKGGCI 395
Query: 349 IRSVFLGNIKDAFTKNPKLTNLLLDPFFSERISASQGSLRQVVAQAALVGVPAPAFSSGL 528
IR+ FL IK A+ +NP+L NL++D F+ + Q + R VVA+A G+ P S+ L
Sbjct: 396 IRAKFLDRIKKAYDRNPELANLIVDREFAREMVQRQNAWRWVVARAVEAGISTPGMSASL 455
Query: 529 AFYD 540
+++D
Sbjct: 456 SYFD 459
Score = 51.2 bits (117), Expect = 7e-07
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +2
Query: 545 YRSNVLPANLLQAQRDYFGAHTYELLNKPG 634
YR + LPANL+QAQRD FGAHTYE +++PG
Sbjct: 461 YRCSRLPANLIQAQRDLFGAHTYERIDRPG 490
>08_01_0713 - 6307737-6308789,6308886-6309056
Length = 407
Score = 28.3 bits (60), Expect = 6.0
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +1
Query: 19 TAGQKGTGKWTGISALEYGVPVTLIGEAVFARCL-SAIKDERVKASSTLPGSSYKFEGDK 195
T Q G+ G+ +Y +P I F+ CL S +K+E L GS+ +GD
Sbjct: 164 TLDQYGSSGVVGLGLGKYSLPQQ-ISVTRFSYCLPSWVKNELFSPPYVLFGSNAVLQGDM 222
Query: 196 KEFLEHLRKALYASKLISY 252
FL K + ISY
Sbjct: 223 TPFLPGFPKYYLKLEGISY 241
>02_01_0297 +
1986422-1986570,1986960-1987065,1987188-1987464,
1987805-1988305,1989010-1990016,1990131-1990781,
1991337-1991633,1991735-1992013,1993070-1993198,
1993291-1993491,1993651-1993793,1993878-1994190,
1994349-1994488,1995320-1995398,1995484-1995753,
1996208-1996425,1996521-1996632
Length = 1623
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 482 RLPSSEYRHPLSHLASHSMMGYRSNVL 562
+ PS++ H + H+ HS G SN+L
Sbjct: 256 QFPSNQNSHQIQHIGGHSNSGMHSNML 282
>06_01_0447 + 3159092-3159543,3159699-3159825,3160640-3161392
Length = 443
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 382 AFTKNPKLTNLLLDPFFSERISASQGSLRQVVAQAALVGVPAPAFSSGLAFYDG 543
A +KNPK LL + S I + S+RQ ++ V +PA + LA +G
Sbjct: 250 ASSKNPKSGTLLQNYIKSLGIGPIKSSVRQAPPESTAVSSSSPASTQKLAEVNG 303
>04_04_0961 +
29715938-29716034,29716918-29717133,29717438-29717776,
29718247-29719274,29719465-29719551,29719636-29720043,
29720394-29720558,29720742-29721036,29721131-29721345,
29721838-29722143,29722474-29722537,29722644-29722883,
29722959-29723062
Length = 1187
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Frame = +1
Query: 10 IRDTAGQKGTGKWTGISA----LEYGVPVTLIGEAVFARCLSAIKDERVKASS 156
I D + G G W G++A + +P+T + + + A+ ++A KD R+K+++
Sbjct: 210 IDDVENRHGVGAWAGLAATLAIMACNIPLTRMQKRLQAKIMAA-KDGRMKSTT 261
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,870,483
Number of Sequences: 37544
Number of extensions: 384753
Number of successful extensions: 971
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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