Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_I18
         (683 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U30255-1|AAA75302.1|  483|Homo sapiens phosphogluconate dehydrog...   266   5e-71
BC000368-1|AAH00368.1|  483|Homo sapiens phosphogluconate dehydr...   266   5e-71
AL139424-1|CAI95751.1|  483|Homo sapiens phosphogluconate dehydr...   266   5e-71

>U30255-1|AAA75302.1|  483|Homo sapiens phosphogluconate
           dehydrogenase protein.
          Length = 483

 Score =  266 bits (652), Expect = 5e-71
 Identities = 125/182 (68%), Positives = 145/182 (79%), Gaps = 1/182 (0%)
 Frame = +1

Query: 1   LPKIRDTAGQKGTGKWTGISALEYGVPVTLIGEAVFARCLSAIKDERVKASSTLPG-SSY 177
           LPKIRD+AGQKGTGKWT ISALEYGVPVTLIGEAVFARCLS++KDER++AS  L G   +
Sbjct: 251 LPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQKF 310

Query: 178 KFEGDKKEFLEHLRKALYASKLISYAQGXMLLREAAVVNKWNLNYGSIALMWRGGCIIRS 357
           +F+GDKK FLE +RKALYASK+ISYAQG MLLR+AA    W LNYG IALMWRGGCIIRS
Sbjct: 311 QFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRS 370

Query: 358 VFLGNIKDAFTKNPKLTNLLLDPFFSERISASQGSLRQVVAQAALVGVPAPAFSSGLAFY 537
           VFLG IKDAF +NP+L NLLLD FF   +   Q S R+ V+     G+P P F++ L+FY
Sbjct: 371 VFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFY 430

Query: 538 DG 543
           DG
Sbjct: 431 DG 432



 Score = 89.0 bits (211), Expect = 1e-17
 Identities = 36/45 (80%), Positives = 41/45 (91%)
 Frame = +2

Query: 542 GYRSNVLPANLLQAQRDYFGAHTYELLNKPGEYIHTNWTGHGGNV 676
           GYR  +LPA+L+QAQRDYFGAHTYELL KPG++IHTNWTGHGG V
Sbjct: 432 GYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGTV 476


>BC000368-1|AAH00368.1|  483|Homo sapiens phosphogluconate
           dehydrogenase protein.
          Length = 483

 Score =  266 bits (652), Expect = 5e-71
 Identities = 125/182 (68%), Positives = 145/182 (79%), Gaps = 1/182 (0%)
 Frame = +1

Query: 1   LPKIRDTAGQKGTGKWTGISALEYGVPVTLIGEAVFARCLSAIKDERVKASSTLPG-SSY 177
           LPKIRD+AGQKGTGKWT ISALEYGVPVTLIGEAVFARCLS++KDER++AS  L G   +
Sbjct: 251 LPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQKF 310

Query: 178 KFEGDKKEFLEHLRKALYASKLISYAQGXMLLREAAVVNKWNLNYGSIALMWRGGCIIRS 357
           +F+GDKK FLE +RKALYASK+ISYAQG MLLR+AA    W LNYG IALMWRGGCIIRS
Sbjct: 311 QFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRS 370

Query: 358 VFLGNIKDAFTKNPKLTNLLLDPFFSERISASQGSLRQVVAQAALVGVPAPAFSSGLAFY 537
           VFLG IKDAF +NP+L NLLLD FF   +   Q S R+ V+     G+P P F++ L+FY
Sbjct: 371 VFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFY 430

Query: 538 DG 543
           DG
Sbjct: 431 DG 432



 Score = 89.0 bits (211), Expect = 1e-17
 Identities = 36/45 (80%), Positives = 41/45 (91%)
 Frame = +2

Query: 542 GYRSNVLPANLLQAQRDYFGAHTYELLNKPGEYIHTNWTGHGGNV 676
           GYR  +LPA+L+QAQRDYFGAHTYELL KPG++IHTNWTGHGG V
Sbjct: 432 GYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGTV 476


>AL139424-1|CAI95751.1|  483|Homo sapiens phosphogluconate
           dehydrogenase protein.
          Length = 483

 Score =  266 bits (652), Expect = 5e-71
 Identities = 125/182 (68%), Positives = 145/182 (79%), Gaps = 1/182 (0%)
 Frame = +1

Query: 1   LPKIRDTAGQKGTGKWTGISALEYGVPVTLIGEAVFARCLSAIKDERVKASSTLPG-SSY 177
           LPKIRD+AGQKGTGKWT ISALEYGVPVTLIGEAVFARCLS++KDER++AS  L G   +
Sbjct: 251 LPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQKF 310

Query: 178 KFEGDKKEFLEHLRKALYASKLISYAQGXMLLREAAVVNKWNLNYGSIALMWRGGCIIRS 357
           +F+GDKK FLE +RKALYASK+ISYAQG MLLR+AA    W LNYG IALMWRGGCIIRS
Sbjct: 311 QFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRS 370

Query: 358 VFLGNIKDAFTKNPKLTNLLLDPFFSERISASQGSLRQVVAQAALVGVPAPAFSSGLAFY 537
           VFLG IKDAF +NP+L NLLLD FF   +   Q S R+ V+     G+P P F++ L+FY
Sbjct: 371 VFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFY 430

Query: 538 DG 543
           DG
Sbjct: 431 DG 432



 Score = 89.0 bits (211), Expect = 1e-17
 Identities = 36/45 (80%), Positives = 41/45 (91%)
 Frame = +2

Query: 542 GYRSNVLPANLLQAQRDYFGAHTYELLNKPGEYIHTNWTGHGGNV 676
           GYR  +LPA+L+QAQRDYFGAHTYELL KPG++IHTNWTGHGG V
Sbjct: 432 GYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGTV 476


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,596,465
Number of Sequences: 237096
Number of extensions: 2063808
Number of successful extensions: 4112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4109
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)