Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_I15
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual       101   1e-22
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        60   2e-10
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    28   1.1  
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    26   3.5  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   6.1  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   8.1  
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    25   8.1  
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po...    25   8.1  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    25   8.1  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    25   8.1  
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    25   8.1  

>SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  101 bits (241), Expect = 1e-22
 Identities = 57/187 (30%), Positives = 95/187 (50%), Gaps = 3/187 (1%)
 Frame = +1

Query: 1   GMSVPYWDFLGSTIVT-SNYVRLTPDLQSKSGAIWNTSPCQTRNWELQVQFKVHGRSKDL 177
           GM   +W++ GST++   N + LT D+Q++ G I    P  + ++E+  QF+++  S  L
Sbjct: 40  GMRNLWWEYGGSTVIDRKNGIFLTQDVQNQQGWISTRLPTPSSSFEVLFQFRINSESTSL 99

Query: 178 FGDGFVIWYVKDRMENGPVFGSKDYFNGLAIVLDTYSNHNGAHNHQHPYISAMINNGTLH 357
           FGDG   +   +R + GPVFG  D FNG  I +DTY+NH        P +  M  +G   
Sbjct: 100 FGDGLAFFLAAERAKPGPVFGFTDKFNGYGIFIDTYNNHR--PGTLFPRVIVMKGDGHTP 157

Query: 358 YDHDRDGTHTQLAGCEAKFRNYNHDTHISIVYRDDTLIVSTDL--EGKNAWKECLKVENV 531
           YD++ DG   ++A C A     N      + Y  +   +  ++  +G +++ +C  +  V
Sbjct: 158 YDYENDGKANEIASCSALNVRGNDYNLGKLKYDKNAKKLRFEIAYQGSSSFIKCFDLNEV 217

Query: 532 LLPTGYF 552
            LP   F
Sbjct: 218 ELPLTTF 224


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 60.1 bits (139), Expect = 2e-10
 Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 3/182 (1%)
 Frame = +1

Query: 19  WDFLGSTIVTSNYVRLTP--DLQSKSGAIWNTSPCQTRNWELQVQFKVH-GRSKDLFGDG 189
           W + GS    S YV LT     +++SG++W+TS  +   W+L   F  H   +++ F   
Sbjct: 39  WKWYGSVDEDSGYVYLTSKDSNEARSGSLWSTSVLRQVGWQLSTSFVAHVSENENTF--- 95

Query: 190 FVIWYVKDRMENGPVFGSKDYFNGLAIVLDTYSNHNGAHNHQHPYISAMINNGTLHYDHD 369
           F IWY       GPVFG+ D ++GL I  +   +  G       ++   +N+ +      
Sbjct: 96  FAIWYTSAVGSEGPVFGASDKWDGLLISQEI--DQTG-----KIFVRGYLNDKSFELAQF 148

Query: 370 RDGTHTQLAGCEAKFRNYNHDTHISIVYRDDTLIVSTDLEGKNAWKECLKVENVLLPTGY 549
            D      A C  +  +     +I + Y D      + LE     K C +V++V+LP GY
Sbjct: 149 TDPDLPPFAKCTIE-SSPEALNNIILKYGD-----QSGLELFVNDKPCFQVKDVILPQGY 202

Query: 550 FF 555
           +F
Sbjct: 203 YF 204


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 253 FNGLAIVLDTYSNHNGAHNHQHPYISAMINNGTLHYD 363
           F  ++ V ++  N+   H HQH  + AMI N +L  D
Sbjct: 172 FQNVSQVANSIHNYANHHKHQHLQLLAMILNQSLPMD 208


>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 267 RETVEIVLAAENRPVFHTIFDV--PNYESIAKQVLAPTMYFELHLK 136
           RE VE V A         +F++  PN  S+ + +  P  YF+L L+
Sbjct: 413 REVVEAVKARHYHIACTRVFELTHPNVGSLEESIHHPLQYFQLSLE 458


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -3

Query: 416  LNFASHPANW-VWVPSRSWS 360
            L +AS P NW VW P R WS
Sbjct: 1120 LEYASTPNNWEVWAP-RVWS 1138


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 255 EIVLAAENRPVFHTIFDVPNYESIAKQVLAPTMYFELHL 139
           + +LAA+ R  F ++   P+ ES+ K+        ELHL
Sbjct: 31  QYLLAAQLRDEFLSLHPAPSAESVEKEGAELEFEHELHL 69


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -2

Query: 291 VAVRV*NNRETVEIVLAAENRPVFHTIFDVPNYESIAKQVLAPTMYFELH 142
           V V+     ET+E ++  +NR +  T  DVP    +A     P+  FEL+
Sbjct: 354 VPVQTEETTETLEDLI--KNRIISKTFDDVPKRAPVAVTEFRPSELFELN 401


>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 471

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 178 FGDGFVIWYVKDRMENGPVFG 240
           F DG+ +W + + M+ G V G
Sbjct: 74  FVDGYTLWILMEHMDGGSVSG 94


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -2

Query: 219 HTIFDVPNYESIAKQVLAPTMYFELHLKLPVSRLARRSVPN 97
           H++ D  NY+S +          E H K+ +S +   S PN
Sbjct: 280 HSVVDFSNYKSYSTWKARELQTLEQHRKIMLSLIPLSSSPN 320


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 286 SNHNGAHNHQHPYISAMINNGTLHYDHDRDGTH 384
           SN    H+H H YI+  +  G  ++ H   G H
Sbjct: 738 SNGGHHHHHHHHYITGHVYGG--YHKHSGSGGH 768


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 121 TRNWELQVQFKVHGRSKDLFGDGFVIWYVK 210
           + N+   VQ K++G       +G+ IWY+K
Sbjct: 352 SENFGNSVQAKLYGSGSGDCPEGYCIWYLK 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,733
Number of Sequences: 5004
Number of extensions: 55289
Number of successful extensions: 154
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)