Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_I15
(583 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0306 - 19396423-19397112,19397645-19397916,19398047-19398215 32 0.29
12_01_0209 - 1583401-1583498,1583879-1583922,1584285-1584373,158... 30 1.5
08_02_1287 - 25886509-25886766,25886887-25887004,25887098-258871... 30 1.5
11_01_0208 - 1628020-1628117,1628282-1628325,1628790-1628878,162... 29 2.0
04_03_0935 + 20918617-20919299,20919328-20919627,20919680-209198... 29 2.7
10_07_0187 - 13919143-13919901 29 3.6
09_04_0463 - 17803120-17803233,17803647-17803758,17803866-178039... 29 3.6
08_02_0707 - 20212190-20214592 29 3.6
04_04_0636 + 26804533-26805036 28 4.7
05_03_0678 - 16871481-16871620,16871836-16871881,16872170-168722... 27 8.2
>06_03_0306 - 19396423-19397112,19397645-19397916,19398047-19398215
Length = 376
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 232 VFGSKDYFNGLAIV-LDTYSNHNGAHNHQHPYISAMINNGTLHYDHDRDGTH 384
VF K Y GL + + + H+H HP+ A ++ G + HD G H
Sbjct: 156 VFMKKSYQRGLNPADMAAVDDDDLLHHHHHPFPPAQLHGGAADHKHDGAGGH 207
>12_01_0209 -
1583401-1583498,1583879-1583922,1584285-1584373,
1584911-1585018,1585158-1585243,1585385-1585472,
1585970-1586140,1586379-1586454,1586534-1586583,
1586692-1586754,1586839-1586892,1587038-1587140,
1587265-1587367,1587479-1587569,1587629-1587669,
1587801-1587879
Length = 447
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = +1
Query: 124 RNWELQ---VQFKVHGRSKDLFGDGFVIWYVKDRMENGPVFGSKDYFNGLAI 270
RNW L V + V + + F +W V DR G F SKD LA+
Sbjct: 254 RNWPLMSSIVTYCVFSLHDTAYSEIFSLWTVSDRKYGGLSFSSKDVGQVLAV 305
>08_02_1287 -
25886509-25886766,25886887-25887004,25887098-25887177,
25887258-25887338,25887493-25887576,25888013-25888171,
25888660-25888752,25888928-25888945,25889194-25889280,
25889634-25889760,25889849-25889920,25890319-25890404,
25890519-25890626,25890709-25890850,25891432-25891508,
25891902-25892054,25892411-25892503,25892608-25892790,
25892924-25893334
Length = 809
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/74 (22%), Positives = 31/74 (41%)
Frame = +1
Query: 208 KDRMENGPVFGSKDYFNGLAIVLDTYSNHNGAHNHQHPYISAMINNGTLHYDHDRDGTHT 387
+D + F + + G+ +++D NH N + P +S + + +Y G
Sbjct: 334 RDAINEFKTFVREAHKRGIEVIMDVVFNHTAEGNEKGPILSFRGIDNSTYYMLAPKGEFY 393
Query: 388 QLAGCEAKFRNYNH 429
+GC F N NH
Sbjct: 394 NYSGCGNTF-NCNH 406
>11_01_0208 -
1628020-1628117,1628282-1628325,1628790-1628878,
1628986-1629030,1629397-1629504,1629650-1629735,
1629870-1629957,1630275-1630445,1630718-1630793,
1630877-1630926,1631035-1631097,1631201-1631254,
1631398-1631500,1631626-1631728,1632038-1632098,
1632186-1632226,1632375-1632453
Length = 452
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = +1
Query: 124 RNWELQ---VQFKVHGRSKDLFGDGFVIWYVKDRMENGPVFGSKDYFNGLAI 270
RNW L + + V + + F +W V DR G F SKD LA+
Sbjct: 244 RNWPLMSSIITYCVFSLHDTAYSEIFSLWTVSDRKYGGLSFSSKDVGQVLAV 295
>04_03_0935 +
20918617-20919299,20919328-20919627,20919680-20919836,
20921338-20921397,20921554-20921670
Length = 438
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +1
Query: 304 HNHQHPYISAMINNGTLHYDHDRDGTHTQLAGCEAKFRNYNH-DTHI 441
H +HP +GT YD +R G T+ G F+ H D H+
Sbjct: 140 HARRHPGDEDDEEDGTFSYDTERGGEWTRRGGWRLPFKGQAHYDRHL 186
>10_07_0187 - 13919143-13919901
Length = 252
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 117 ARRSVPNSARLRLQVGRQPNVIRSNYRAT*KVPIR 13
A R++P++ R+R + QP + + A KVP+R
Sbjct: 130 AARAIPSAPRVRFHLPEQPPAVPYHQSAPVKVPVR 164
>09_04_0463 -
17803120-17803233,17803647-17803758,17803866-17803927,
17804171-17804269,17804370-17804474,17804560-17804639,
17806445-17806517,17806611-17806700,17807215-17807277,
17808104-17808155,17808504-17808604,17809139-17809238,
17809683-17809746,17810127-17810184,17810549-17810635,
17810736-17810870,17810950-17811054,17811247-17811351,
17811427-17811663,17812287-17812380,17812863-17813020,
17813289-17813363,17813448-17813512,17814206-17814260
Length = 762
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +1
Query: 259 GLAIVLDTYSNHNGAHNHQHPYISAM--INNGTLH-YDHDRDGTHTQLAGCEAKFRNYNH 429
G+ ++LD NH + HPY+++ I+N + D +++ +GC N NH
Sbjct: 341 GIEVILDVVYNHTNEADDAHPYMTSFRGIDNKVYYMLDLNKNAELLNFSGC-GNTLNCNH 399
>08_02_0707 - 20212190-20214592
Length = 800
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +1
Query: 289 NHNGAHNHQHPYISAMINNGTLHYDHDR--DGTHTQLAGCE---AKFRNYNHDTH 438
+H+ +H+H H + + ++ H++HD G + A CE ++++HD H
Sbjct: 501 SHSHSHSHSHSHSHSHVHGHEDHHNHDHALQGVNHNGACCEHHGDANKSHHHDHH 555
>04_04_0636 + 26804533-26805036
Length = 167
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3
Query: 174 PVWRWIRNLVRQRSYGKRAGFRQQ 245
PV RW R+LVR+ S G++ G R++
Sbjct: 59 PVLRWGRSLVRRLSLGRKDGGRRR 82
>05_03_0678 -
16871481-16871620,16871836-16871881,16872170-16872243,
16872495-16872552,16872640-16872702,16872891-16873012,
16873132-16873247,16873367-16873428,16873497-16873589,
16874061-16874138,16874248-16874423,16874500-16874550,
16874964-16875078
Length = 397
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 172 DLFGDGFVIWYVKDRMENGPVFGSKDYF 255
D+FGD ++WY R+ N DYF
Sbjct: 139 DIFGDPKMLWYFPVRLNNEQRAAIADYF 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,142,725
Number of Sequences: 37544
Number of extensions: 386342
Number of successful extensions: 926
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -