Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_I13
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0086 - 699617-699766,699851-699908,699998-700068,700210-70...    31   0.64 
02_05_0493 + 29484285-29484467,29484757-29484900,29485014-294850...    29   3.4  

>03_01_0086 -
           699617-699766,699851-699908,699998-700068,700210-700286,
           700384-700466,700545-700604,700848-700983,701056-701126,
           701248-701339,701454-701551,701891-702043,702146-702311,
           702457-702885,703076-703157,703245-703504
          Length = 661

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -2

Query: 419 LTAGLRHFDAIDAPIYENVRGTNL*NKHFLIINLMYTLNNHVLLTNIFPI 270
           LT GL    AID P  ENV  T L + H   ++    +  H+ L   +P+
Sbjct: 595 LTQGLAGIQAIDVPGVENVDVTELVDGHSSYLSAAQQILEHLELNTYYPV 644


>02_05_0493 +
           29484285-29484467,29484757-29484900,29485014-29485088,
           29485167-29485354,29485441-29485606,29485698-29486099,
           29486210-29486341
          Length = 429

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 316 CIHLIITYYLQIYFQLHSSNQEFLDVIAYFCNKSEISLR 200
           C  L +   L  +    +S+QE  DV+ Y CN +E  LR
Sbjct: 150 CSVLALQKLLNFFSTQRNSSQEEFDVVVYDCNNTEEILR 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,188,506
Number of Sequences: 37544
Number of extensions: 236557
Number of successful extensions: 376
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)