Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_I11
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024835-3|AAK68538.2|  405|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z70204-1|CAA94111.1|  643|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    28   6.5  
Z70306-2|CAA94323.2|  785|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore co...    27   8.6  
AF000417-1|AAC39118.1|  785|Caenorhabditis elegans high-affinity...    27   8.6  
AC006761-3|AAL32244.2|  860|Caenorhabditis elegans Hypothetical ...    27   8.6  
AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AC024835-3|AAK68538.2|  405|Caenorhabditis elegans Hypothetical
           protein Y57E12B.4 protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 23/90 (25%), Positives = 31/90 (34%)
 Frame = -2

Query: 432 PCTKGLLMCDTKDGSVINLRPS*SDGLS*IGPGYDSPDTCPGTLGTLETSNRVVGTPGMM 253
           PC       DT    V +  P  +   S     +   D+      T  TS     TP + 
Sbjct: 156 PCATSPAEIDTTTPQVSSSEPFTTSENSSTAEPFAPSDSTTSINETQTTSTHAETTPEIH 215

Query: 252 LIKEPALPEYIPEPADPTPTLLAPEARKFT 163
             ++PA  E    P D  PT L  E +  T
Sbjct: 216 YTEKPATLEPSKAPTDDCPTTLVVENKTLT 245


>Z70204-1|CAA94111.1|  643|Caenorhabditis elegans Hypothetical
           protein C11G6.1 protein.
          Length = 643

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -2

Query: 339 PGYDSPDTCPGTLGTLETSNRVVGTPGMMLIKEPALPEYIPEPADPTPTLLAPEARK 169
           PG  +P + PG+  ++ T  +V G PG     +P     +P+P    P     E RK
Sbjct: 370 PG-SAPSSRPGSSMSIGTPTKVKGLPGRPKKPKPEGVVTVPKPKGRPPKKATLEKRK 425


>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +2

Query: 197 GVGSAGSGIYSGKAGSLISIMPGVPTTRLLVSRVPKVPGQVSGESYPGP 343
           G G AGSG  S ++    SI+P  PT  +  S VP  P        P P
Sbjct: 427 GYGGAGSGASSTESKE--SIVPPEPTPSMQESPVPNAPQVKMEPEKPSP 473


>Z70306-2|CAA94323.2|  785|Caenorhabditis elegans Hypothetical
           protein C06G8.2 protein.
          Length = 785

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 2   FGHFICFDLMFQVPAVQVVQKMRVTDVIFT--TMWFSELP 115
           FGH  C+ L F +PA+ ++    V  ++F   + W+ ++P
Sbjct: 198 FGHDSCYPLAFGIPAILMI----VATLVFMAGSFWYKKVP 233


>U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore
           complex protein protein11 protein.
          Length = 805

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 318 TCPGTLGTL-ETSNRVVGTPGMMLIKEPALPEYIPEPADPTPTL 190
           T P T  TL +T + V  TP   L    +    +P+PA+ TPTL
Sbjct: 505 TTPATAATLGQTPSTVSATPS--LPTTTSTTSTLPKPAEATPTL 546


>AF000417-1|AAC39118.1|  785|Caenorhabditis elegans high-affinity
           peptide transporter protein.
          Length = 785

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 2   FGHFICFDLMFQVPAVQVVQKMRVTDVIFT--TMWFSELP 115
           FGH  C+ L F +PA+ ++    V  ++F   + W+ ++P
Sbjct: 198 FGHDSCYPLAFGIPAILMI----VATLVFMAGSFWYKKVP 233


>AC006761-3|AAL32244.2|  860|Caenorhabditis elegans Hypothetical
           protein Y41G9A.4b protein.
          Length = 860

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 272 TTRLLVSRVPKVPGQVSGESYPGPIYDNPSDHDGLRLITDPSLV 403
           T   L + +P +   +   ++PG IY+N +D DG    +D  L+
Sbjct: 819 TATTLTTTIPLI--DLQNGNHPGQIYENDNDDDGSSTSSDEILL 860


>AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical
           protein W08E12.2 protein.
          Length = 120

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 551 TYARREIGIASCSVVACKDNEFQSCGYRY 637
           +Y     G +SC    C  N F  CGYR+
Sbjct: 80  SYCPNNFGYSSC----CNSNNFSCCGYRF 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,404,380
Number of Sequences: 27780
Number of extensions: 390461
Number of successful extensions: 1132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)