Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_I09
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   213   9e-58
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   213   9e-58
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.5  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  213 bits (521), Expect = 9e-58
 Identities = 105/150 (70%), Positives = 118/150 (78%), Gaps = 4/150 (2%)
 Frame = +1

Query: 169 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAF 348
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+E+QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 349 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTPIVISWAIAQT 528
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDKNT  +  +     
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 529 VTTVAGIIS----YPFDTVRRRMMMQSGRA 606
               AG  S    YP D  R R+    G+A
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAADVGKA 150



 Score = 95.5 bits (227), Expect = 4e-22
 Identities = 58/139 (41%), Positives = 77/139 (55%)
 Frame = +1

Query: 196 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGL 375
           F  +  +GG + A S   V P++  +  L    V K   E + + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKAGGE-REFTGLGNCLTKIFKADGI 172

Query: 376 LSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTPIVISWAIAQTVTTVAGIIS 555
              +RG   +V      +A  F F D  + +      K TP +ISW IAQ VTTVAGI+S
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKKTPFLISWGIAQVVTTVAGIVS 230

Query: 556 YPFDTVRRRMMMQSGRAKS 612
           YPFDTVRRRMMMQSGRAKS
Sbjct: 231 YPFDTVRRRMMMQSGRAKS 249



 Score = 27.1 bits (57), Expect = 0.14
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +1

Query: 256 PIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 414
           P + V+  + +Q  S +   +  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  213 bits (521), Expect = 9e-58
 Identities = 105/150 (70%), Positives = 118/150 (78%), Gaps = 4/150 (2%)
 Frame = +1

Query: 169 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAF 348
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+E+QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 349 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTPIVISWAIAQT 528
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDKNT  +  +     
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 529 VTTVAGIIS----YPFDTVRRRMMMQSGRA 606
               AG  S    YP D  R R+    G+A
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAADVGKA 150



 Score = 95.5 bits (227), Expect = 4e-22
 Identities = 58/139 (41%), Positives = 77/139 (55%)
 Frame = +1

Query: 196 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGL 375
           F  +  +GG + A S   V P++  +  L    V K   E + + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKAGGE-REFTGLGNCLTKIFKADGI 172

Query: 376 LSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTPIVISWAIAQTVTTVAGIIS 555
              +RG   +V      +A  F F D  + +      K TP +ISW IAQ VTTVAGI+S
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKKTPFLISWGIAQVVTTVAGIVS 230

Query: 556 YPFDTVRRRMMMQSGRAKS 612
           YPFDTVRRRMMMQSGRAKS
Sbjct: 231 YPFDTVRRRMMMQSGRAKS 249



 Score = 27.1 bits (57), Expect = 0.14
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +1

Query: 256 PIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 414
           P + V+  + +Q  S +   +  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 495 PHRHQLGHRANRHHSRRYH 551
           PH H +GH  +  H+  +H
Sbjct: 414 PHHHTMGHGHSHIHATPHH 432


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 21  ILQSCDHEITPNLLIKNRGFVFRGFSIPCVPKSFLVRKYPP 143
           I++  D  ++P   I+NR  +  G S P   +     K+PP
Sbjct: 369 IIELQDLRMSPLPSIRNRSGLVSGSSTPGTGREHDPAKFPP 409


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 311 AICLLTCWT 285
           A C+L+CWT
Sbjct: 103 ATCVLSCWT 111


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 311 AICLLTCWT 285
           A C+L+CWT
Sbjct: 156 ATCVLSCWT 164


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -2

Query: 399 EVTTPE*EQTLLLGNADEGVDDTLVAL--VLGDLF 301
           E+T P  E+T+ + N  E + +T V    +L D F
Sbjct: 368 EITVPSNEETIDINNGAELMQETHVCFFSLLRDAF 402


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +3

Query: 489 EHPHRHQ 509
           EHPH+HQ
Sbjct: 19  EHPHQHQ 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,199
Number of Sequences: 438
Number of extensions: 4148
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)