Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_I08
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    27   1.9  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   3.4  
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...    25   7.8  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    25   7.8  

>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 196 VLVYFRYSEICLNFSNSFVKQCKNEKNNVKF 288
           +LVYF + ++C+ F  SF KQ +  + +  F
Sbjct: 209 LLVYFNFKKLCVLFDASFDKQIETFRLDFDF 239


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 339 TIVMSLYLISYKIIRKLLQYYLNTKIL 419
           TI +S+YL  + +   LL Y+LN ++L
Sbjct: 12  TIKVSIYLFLHTLTYGLLNYHLNPRLL 38


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 569 RRTCVRETDGGSHEKSVKC*TGKRKFPQ 486
           RR C R   G  H K V+C    R  P+
Sbjct: 5   RRNCGRNKHGRGHTKFVRCINCSRAVPK 32


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 285 IWLTKLSGGLKDEILIKITIVMSLYLI 365
           +WL  +SGGLK   L   T  + +Y++
Sbjct: 176 VWLYTVSGGLKSTFLSDWTHTVIVYIV 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,113,354
Number of Sequences: 5004
Number of extensions: 40451
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)