Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_I08
         (569 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22...    38   0.004
11_04_0297 + 16050333-16050348,16050564-16052518                       30   1.1  
06_01_0075 + 615415-616061,616144-616295,616829-617865                 29   2.0  

>06_01_0023 +
           227014-227166,227893-228001,228096-228157,228284-228493,
           228609-228696,228774-228936,229037-229235,229456-229653,
           229887-230018,230182-230302,230453-230563,230710-230779,
           230880-231063,231137-231346
          Length = 669

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -2

Query: 568 DGRVYERLMEEAMKSPLNAEPVNESFHKYLKPLMQ 464
           DG VY  L EEA K PLN   V + + ++L+PL++
Sbjct: 627 DGNVYPALYEEAWKDPLNDTDVPDGYQEHLRPLLK 661


>11_04_0297 + 16050333-16050348,16050564-16052518
          Length = 656

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 10/26 (38%), Positives = 21/26 (80%)
 Frame = -2

Query: 367 EIRYNDMTMVILISISSFNPPDNFVN 290
           E R+++++M +L+ +S+FNP D+F +
Sbjct: 486 ENRFDEVSMALLLCMSAFNPTDSFAS 511


>06_01_0075 + 615415-616061,616144-616295,616829-617865
          Length = 611

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/26 (38%), Positives = 21/26 (80%)
 Frame = -2

Query: 367 EIRYNDMTMVILISISSFNPPDNFVN 290
           E R+++++M +L+ +S+FNP D+F +
Sbjct: 462 ENRFDEVSMELLLCMSAFNPTDSFAS 487


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,663,705
Number of Sequences: 37544
Number of extensions: 185280
Number of successful extensions: 360
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)