Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_I07
(494 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 95 5e-21
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 94 1e-20
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 84 1e-17
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 79 3e-16
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 77 1e-15
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 76 3e-15
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 55 7e-09
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 54 9e-09
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 54 2e-08
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 52 6e-08
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 48 8e-07
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 48 1e-06
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 46 2e-06
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 46 4e-06
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 40 2e-04
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 39 5e-04
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 39 5e-04
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 38 0.001
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 28 0.67
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 28 0.67
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 28 0.89
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 27 1.2
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 27 2.1
SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S... 26 2.7
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc... 26 2.7
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 26 2.7
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual 25 4.7
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 25 8.3
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 25 8.3
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 25 8.3
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 95.1 bits (226), Expect = 5e-21
Identities = 40/64 (62%), Positives = 49/64 (76%)
Frame = +3
Query: 303 MGTTKRLKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGQIDVDGEEVEMALWD 482
M T R K+ +VGDG GKTCLL V+++ FPE YVPTVF+NYV ++VDG VE+ALWD
Sbjct: 1 MATELRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWD 60
Query: 483 TAGQ 494
TAGQ
Sbjct: 61 TAGQ 64
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 93.9 bits (223), Expect = 1e-20
Identities = 39/64 (60%), Positives = 49/64 (76%)
Frame = +3
Query: 303 MGTTKRLKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGQIDVDGEEVEMALWD 482
M T R K+ +VGDG GKTCLL V+++ FPE YVPTVF+NYV ++VDG +E+ALWD
Sbjct: 1 MTTELRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWD 60
Query: 483 TAGQ 494
TAGQ
Sbjct: 61 TAGQ 64
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 84.2 bits (199), Expect = 1e-17
Identities = 38/59 (64%), Positives = 44/59 (74%)
Frame = +3
Query: 318 RLKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGQIDVDGEEVEMALWDTAGQ 494
R K+ VVGDG GKT LL V+T FP EYVPTVF+NYV VDG+ V++ALWDTAGQ
Sbjct: 8 RRKLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQ 66
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 79.4 bits (187), Expect = 3e-16
Identities = 32/57 (56%), Positives = 43/57 (75%)
Frame = +3
Query: 324 KITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGQIDVDGEEVEMALWDTAGQ 494
KI ++GDG GKT LL V+T+ FP+ Y PT+F+NY+ I VDG +E++LWDTAGQ
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQ 71
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 77.4 bits (182), Expect = 1e-15
Identities = 34/58 (58%), Positives = 41/58 (70%)
Frame = +3
Query: 321 LKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGQIDVDGEEVEMALWDTAGQ 494
+K VVGDG VGKTCLL YT N+FP +YVPTVFDNY + + E + L+DTAGQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQ 61
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 75.8 bits (178), Expect = 3e-15
Identities = 34/59 (57%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
Frame = +3
Query: 324 KITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGQIDV--DGEEVEMALWDTAGQ 494
K+ VVGDG GKTCLL V++ FPE YVPTVF+NY+ I + + +E+ALWDTAGQ
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQ 74
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 54.8 bits (126), Expect = 7e-09
Identities = 21/59 (35%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Frame = +3
Query: 321 LKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTV-FDNYVGQIDVDGEEVEMALWDTAGQ 494
+K+ ++GD VGK+CLL ++ + F ++ T+ D + I++DG+ +++ +WDTAGQ
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 68
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 54.4 bits (125), Expect = 9e-09
Identities = 25/60 (41%), Positives = 38/60 (63%)
Frame = +3
Query: 315 KRLKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGQIDVDGEEVEMALWDTAGQ 494
+ K+ VVGDG VGK+ L ++ F +EY PT+ D+Y + ++DGE + + DTAGQ
Sbjct: 7 REYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQ 66
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 53.6 bits (123), Expect = 2e-08
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Frame = +3
Query: 303 MGTTKR--LKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGQ-IDVDGEEVEMA 473
M KR LK+ ++GD VGKTCL+ + +F EY T+ +++ + + VD + V +
Sbjct: 1 MSAQKRVFLKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQ 60
Query: 474 LWDTAGQ 494
LWDTAGQ
Sbjct: 61 LWDTAGQ 67
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 51.6 bits (118), Expect = 6e-08
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Frame = +3
Query: 324 KITVVGDGMVGKTCLLYVYTRNEFPEEYVPTV-FDNYVGQIDVDGEEVEMALWDTAGQ 494
K+ ++GD VGK+CLL + + + E Y+ T+ D + +++G+ V++ +WDTAGQ
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQ 67
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 48.0 bits (109), Expect = 8e-07
Identities = 24/64 (37%), Positives = 32/64 (50%)
Frame = +3
Query: 303 MGTTKRLKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGQIDVDGEEVEMALWD 482
M K +I V+G VGK+ L Y N F E Y PT+ + + I G+E + D
Sbjct: 1 MAPIKSRRIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIID 60
Query: 483 TAGQ 494
TAGQ
Sbjct: 61 TAGQ 64
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 47.6 bits (108), Expect = 1e-06
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +3
Query: 321 LKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTV-FDNYVGQIDVDGEEVEMALWDTAGQ 494
LK+ ++G+ VGKT ++ Y +F ++Y T+ D ++ VD + V + LWDTAGQ
Sbjct: 9 LKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQ 67
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 46.4 bits (105), Expect = 2e-06
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +3
Query: 321 LKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGQ-IDVDGEEVEMALWDTAGQ 494
+K+ ++GD +GKT L+ Y + F EE T+ N++ + I + E+ ++WD GQ
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQ 69
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 45.6 bits (103), Expect = 4e-06
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Frame = +3
Query: 324 KITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGQ-IDVDGEEVEMALWDTAGQ 494
K ++GD VGK+ LL +TRNEF E T+ + + I +D ++++ +WDTAGQ
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQ 69
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 39.9 bits (89), Expect = 2e-04
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +3
Query: 315 KRLKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGQ-IDVDGEEVEMALWDTAG 491
++ K+ +G+ VGKT L+ + ++F Y T+ +++ + + ++ V + LWDTAG
Sbjct: 10 RKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 69
Query: 492 Q 494
Q
Sbjct: 70 Q 70
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 38.7 bits (86), Expect = 5e-04
Identities = 21/73 (28%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Frame = +3
Query: 282 SDVAARTMGTTKRLKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGQ-IDVD-G 455
S+ A + + T + K+ ++GD VGK+ L+ + +++F + T+ ++ Q + +D
Sbjct: 3 SNTAPKNVVTINQ-KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDEN 61
Query: 456 EEVEMALWDTAGQ 494
V++ +WDTAGQ
Sbjct: 62 TSVKLEIWDTAGQ 74
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 38.7 bits (86), Expect = 5e-04
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Frame = +3
Query: 321 LKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGQIDVDG-----EEVEMALWDT 485
+KI + G GK+CLL + +N++ ++ TV ++ +I G + +++ +WDT
Sbjct: 10 VKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDT 69
Query: 486 AGQ 494
AGQ
Sbjct: 70 AGQ 72
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 37.5 bits (83), Expect = 0.001
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 324 KITVVGDGMVGKTCLLYVYTRNEFPEEYVPTV-FDNYVGQIDVDGEEVEMALWDTAGQ 494
K+ +VGDG GKT + + EF ++Y+ T+ + + + E+ +WDTAGQ
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQ 68
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 28.3 bits (60), Expect = 0.67
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +3
Query: 315 KRLKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGQIDVDGEEVEMALWDTAGQ 494
+ ++I +VG GKT +LY E +PT+ N V+ + +WD GQ
Sbjct: 16 REMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE---TVEYRNISFTVWDVGGQ 71
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 28.3 bits (60), Expect = 0.67
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = -3
Query: 306 PWYVPRHPTNSHTQIHNNSQ*IQRLYSSQSSGTINFIIYLASILHNSYQQ*YNDLINLVE 127
PW + P+ +H NS+ I L + + SI+ N N+L+NL+E
Sbjct: 3970 PW-AEKLPSKMSNHLHKNSR-IVCLSEIHNQLPHQLLCISRSIVFNKQTSFKNNLLNLLE 4027
Query: 126 LL-AIVRRLRLNNART-LFRSWMQS 58
LL + L N R F SW+ +
Sbjct: 4028 LLPTMTHTLPHNRFRLFFFLSWLHA 4052
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 27.9 bits (59), Expect = 0.89
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 309 TTKRLKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGQIDVDGEEVEMALWDTA 488
+ K ++I ++G GKT +LY N+ +PTV N V + ++ +WD
Sbjct: 18 SNKEMRILMLGLDAAGKTTILYKLKLNQ-SVVTIPTVGFNVE---TVTYKNIKFNVWDVG 73
Query: 489 GQ 494
GQ
Sbjct: 74 GQ 75
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 27.5 bits (58), Expect = 1.2
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = -3
Query: 306 PWYVPRHPTNSHTQIHNNSQ*IQRLYSSQSSGTINFIIYLASILHNSYQQ*YN-DLINLV 130
PWY+P +S T I N+ L S I ++ + + Y+ + +V
Sbjct: 1164 PWYIPPPANSSDTNITNSDVTALFLISCFQYIFIGVVLSIGPPYREKVWRNYSFTAVVVV 1223
Query: 129 ELLAIVRRLRLNNARTLFRSWMQ 61
L+ V+ +RL N + F Q
Sbjct: 1224 LLILTVKLIRLQNHKNFFMKLFQ 1246
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 26.6 bits (56), Expect = 2.1
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -1
Query: 377 YVEQAGLSDHTITDHCYLQSLRRPHGTCRDIRQIHTHK---FTITHNKSNVFIV 225
Y Q L+ + + ++ +RRP + + R +H H ++ N N FI+
Sbjct: 244 YKHQDLLASVSYDQYLHVHDIRRPDASTKPARSVHAHSGPIHSVAFNPHNDFIL 297
>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
L34|Schizosaccharomyces pombe|chr 1|||Manual
Length = 112
Score = 26.2 bits (55), Expect = 2.7
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +3
Query: 33 PRDTTELNHSASNCETAYAHCLSVIVSLSRVI 128
PR+ L+H+ + AY CLS R++
Sbjct: 59 PREFARLSHNKKTVQRAYGGCLSANAVKDRIV 90
>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
L34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 111
Score = 26.2 bits (55), Expect = 2.7
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +3
Query: 33 PRDTTELNHSASNCETAYAHCLSVIVSLSRVI 128
PR+ L+H+ + AY CLS R++
Sbjct: 59 PREFARLSHNQKKVQRAYGGCLSANAVKDRIV 90
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 26.2 bits (55), Expect = 2.7
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = -2
Query: 409 TYSSGNSFLVYT*SRQVFPTIPSPTTVIFSLFVVPMVRAATSDKFTHTNSQ*LTINPT 236
TY++G+S+ F ++P+P++ S P ++ + D+F+ T+S LT P+
Sbjct: 58 TYTAGSSY--QNGESDYFGSLPTPSSDKSSTSPFPYLKGSFDDRFSSTHS--LTRQPS 111
>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 4.7
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 381 TRNEFPEEYVPTVFDNYVGQIDVDGEEVEM 470
+RN FP TVFDN +D+ GEE+E+
Sbjct: 75 SRNLFPG----TVFDNADRALDLYGEEIEI 100
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 24.6 bits (51), Expect = 8.3
Identities = 11/46 (23%), Positives = 26/46 (56%)
Frame = +3
Query: 315 KRLKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGQIDVD 452
++ + T+V D ++ + + Y + + +YVP +FD +I++D
Sbjct: 600 RQYRKTMVADKLMEEKYVHYSHYLIKKIMKYVPEIFDGVAFEIEID 645
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 24.6 bits (51), Expect = 8.3
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Frame = +3
Query: 372 YVYTRNEFPEE-----YVPTVFDNYVGQIDVDGEEVEMALWD 482
Y Y + F E+ Y+ FD + QI +DG EM WD
Sbjct: 322 YAYGSSYFDEQSRLTQYIIGAFDKRISQIILDG---EMVTWD 360
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 24.6 bits (51), Expect = 8.3
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 138 NLVELLAIVRRLRLNNARTLFRSWMQSDSIQLCRGETN 25
N+ EL ++V+ L +N W S+ LC+GE N
Sbjct: 419 NVDELYSLVKFLHINPFNDQ-SVWKDQISLPLCQGEEN 455
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,004,948
Number of Sequences: 5004
Number of extensions: 39525
Number of successful extensions: 141
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -