Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_I06
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    34   0.013
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    27   2.6  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    26   4.5  
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    25   7.9  

>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 34.3 bits (75), Expect = 0.013
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 439 ECGLRSGYVELVNLQPRVRLAFSTARAVMQCPTVLGQCILDCVM 570
           ECG R GY+++VN+    +        +  CP V GQ ++D ++
Sbjct: 331 ECGQRGGYLDVVNIPEPAKDQILKLATIDICPPVAGQLLVDMLV 374


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 221 FWVGIESAPVKVLSH*IMSVIITYLMST 304
           F +GI++A + VL+H I +VI+T   S+
Sbjct: 321 FVIGIQNAEIPVLNHIINAVILTSACSS 348


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 474  EPTAEGTTRLQHCEGGDAVPHCVGTMH 554
            +PT    T L  CEGG  VP   GT+H
Sbjct: 1321 QPTGYKRTPLTECEGG--VPLDAGTLH 1345


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +2

Query: 41  VSPDDTFSQPLNCGEPNNAVTHKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTI 202
           ++P D   +PL   EP   VT  +  K      VS P  AP     DV F  +I
Sbjct: 67  LNPKDELEEPLFSEEPLFPVTTSIPTK----TAVSKPKIAPTSAAKDVTFSSSI 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,310,063
Number of Sequences: 5004
Number of extensions: 44972
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)