Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_I06
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0057 + 12460986-12461036,12461108-12461161,12461420-124614... 33 0.16
10_07_0056 + 12451510-12451554,12453099-12453149,12453754-124538... 33 0.16
07_03_1281 - 25439634-25439750,25439868-25440071,25440328-254404... 32 0.28
03_01_0591 - 4366400-4366558,4366782-4366985,4367078-4367152,436... 32 0.38
07_01_0060 - 445619-445739,446026-446182,446274-446365,446516-44... 31 0.50
09_04_0231 + 15875955-15876005,15876141-15876191,15877911-158779... 31 0.66
07_03_1005 + 23249040-23249228,23250453-23250574,23250654-232508... 30 1.5
05_04_0016 - 17176360-17176881 29 3.5
05_03_0458 + 14280953-14281866,14281964-14282912 29 3.5
04_04_1167 + 31432731-31433769,31433893-31433941,31434363-314344... 29 3.5
03_02_0784 - 11154395-11154888,11155284-11155360,11155447-111554... 29 3.5
06_01_0070 + 582659-583426,583535-583624,584130-584208,584387-58... 28 4.6
04_03_0118 - 11474060-11475298 28 4.6
02_05_0310 + 27769988-27770830 28 4.6
03_02_0340 + 7635354-7635621,7635992-7636121,7636865-7636929,763... 28 6.1
03_02_0178 + 6195402-6199158,6199438-6200003 28 6.1
06_01_0337 - 2432823-2432933,2433280-2433373,2434079-2434170,243... 27 8.1
>10_07_0057 +
12460986-12461036,12461108-12461161,12461420-12461482,
12461666-12461716,12461996-12462057,12462156-12462318,
12462829-12462939,12463029-12463166,12463248-12463322,
12463420-12463540,12464827-12464981,12465080-12465154,
12465270-12465473,12465670-12465786
Length = 479
Score = 33.1 bits (72), Expect = 0.16
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 439 ECGLRSGYVELVNLQPRVRLAFSTARAVMQCPTVLGQCILDCVM 570
ECG R GY+E+ VR ++ C + GQ ++ VM
Sbjct: 301 ECGRRGGYMEVTGFSSEVRGEVYKVASLSACSNISGQILMSLVM 344
>10_07_0056 +
12451510-12451554,12453099-12453149,12453754-12453804,
12453879-12453944,12454011-12454072,12454459-12454537,
12454618-12454722,12454824-12454934,12455017-12455154,
12455298-12455399,12455400-12455474,12455574-12455694,
12455768-12455922,12456004-12456078,12456160-12456363,
12457105-12457221
Length = 518
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 439 ECGLRSGYVELVNLQPRVRLAFSTARAVMQCPTVLGQCILDCVM 570
ECG R GY+E+ VR +V C + GQ + VM
Sbjct: 340 ECGKRGGYMEITGFSAPVREQIYKVASVNLCSNITGQILASLVM 383
>07_03_1281 -
25439634-25439750,25439868-25440071,25440328-25440402,
25440477-25440631,25440704-25440824,25440946-25441020,
25441216-25441353,25441617-25441727,25441883-25441987,
25442061-25442139,25442488-25442549,25442634-25442699,
25442812-25442907,25443353-25443403,25443629-25443709
Length = 511
Score = 32.3 bits (70), Expect = 0.28
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 439 ECGLRSGYVELVNLQPRVRLAFSTARAVMQCPTVLGQCILDCVM 570
ECG R GY+E+ VR +V C V GQ + +M
Sbjct: 333 ECGKRGGYMEVTGFSADVREQIYKVASVNLCSNVSGQILASLIM 376
>03_01_0591 -
4366400-4366558,4366782-4366985,4367078-4367152,
4367240-4367394,4367476-4367596,4367720-4367794,
4369435-4369572,4369655-4369765,4369844-4369948,
4370327-4370405,4370561-4370622,4370698-4370763,
4370840-4371024,4371095-4371173
Length = 537
Score = 31.9 bits (69), Expect = 0.38
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 439 ECGLRSGYVELVNLQPRVRLAFSTARAVMQCPTVLGQCILDCVM 570
ECG R GY+E+ VR +V C + GQ + +M
Sbjct: 345 ECGKRGGYMEVTGFSTPVREQLYKIASVNLCSNITGQILASLIM 388
>07_01_0060 -
445619-445739,446026-446182,446274-446365,446516-446580,
447052-447117,447707-447838,448125-448298,449025-449183,
449297-449384,449492-449573,449757-449874,449959-450162
Length = 485
Score = 31.5 bits (68), Expect = 0.50
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 439 ECGLRSGYVELVNLQPRVRLAFSTARAVMQCPTVLGQCIL 558
ECG R GY E+ NL P+ ++ P V GQ +
Sbjct: 303 ECGQRGGYFEMTNLPPKTVDEIYKVASIALSPNVPGQIFM 342
>09_04_0231 +
15875955-15876005,15876141-15876191,15877911-15877976,
15878073-15878134,15878639-15878717,15878839-15878943,
15879032-15879142,15879492-15879629,15879821-15879895,
15880011-15880131,15880196-15880350,15880605-15880679,
15881124-15881327,15881396-15881536
Length = 477
Score = 31.1 bits (67), Expect = 0.66
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 439 ECGLRSGYVELVNLQPRVRLAFSTARAVMQCPTVLGQCILDCVM 570
ECG R GY+E+ V ++ CP + GQ ++ VM
Sbjct: 291 ECGRRGGYMEICGFGDDVIDEMYKLASLTICPNIAGQILISLVM 334
>07_03_1005 +
23249040-23249228,23250453-23250574,23250654-23250800,
23250932-23250998,23251763-23251836,23252010-23252102,
23253433-23253550,23254340-23254402,23254774-23254806,
23255325-23255399
Length = 326
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/32 (50%), Positives = 16/32 (50%)
Frame = -2
Query: 526 ASPPSQC*RRVVPSAVGSPAPRTLSAGRTPPP 431
ASPP C S G PAPR L G PPP
Sbjct: 5 ASPPLPCRAAATASRSGRPAPRLL--GPPPPP 34
>05_04_0016 - 17176360-17176881
Length = 173
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +3
Query: 426 ARGGGVRPALRVRGAGEPTAEGTTRLQHCEG--GDAVPHCVGTMHF 557
A GG R + V G GEP A R EG G+A G+ HF
Sbjct: 121 AAAGGRRQLVAVGGRGEPAAVRGRRRLVAEGGRGEAAVAATGSWHF 166
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -2
Query: 541 TQWGTASPPSQC*RRVVPSAVGSPAPRTLSAGRTPPP 431
+ +G SPPS C R PS S + T S T PP
Sbjct: 15 SSYGPTSPPSSC-RNAAPSPPSSNSTPTSSTTPTVPP 50
>04_04_1167 +
31432731-31433769,31433893-31433941,31434363-31434427,
31435237-31435346,31436327-31436388,31438067-31438113,
31438148-31438272,31438651-31438764,31438852-31438979,
31439059-31439154,31439565-31439706,31439799-31439893,
31439966-31440095,31440179-31440323,31440430-31440656
Length = 857
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 438 GVRPALRVRGAGEPTAEGTTRLQHCEGGDAV 530
G+ P L+VRG PTA+GT + + D V
Sbjct: 728 GIIPGLKVRGTDYPTADGTCIRDYIDVTDLV 758
>03_02_0784 -
11154395-11154888,11155284-11155360,11155447-11155497,
11155599-11155672,11156127-11156215,11156533-11156618,
11157570-11157669,11158540-11158622,11158776-11159194
Length = 490
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 520 PPSQC*RRVVPSAVGSPAPRTLSAGRT 440
PPS C S +G+ APRTL+ G T
Sbjct: 63 PPSSCTCNGASSGMGAVAPRTLALGAT 89
>06_01_0070 +
582659-583426,583535-583624,584130-584208,584387-584493,
584619-584740,585003-585030,587148-587390,587986-588153,
589133-589226,589648-589746,589995-590150,590379-590629
Length = 734
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 214 RRLLGRNRISPRKGSKSLNHVSHHHLLDVNINLYYKH*KYT 336
R+L R+R K +K L + HH++ V +LY KYT
Sbjct: 520 RKLAYRHRAIGEKYTKGLEKILDHHMIKVWNDLYSATDKYT 560
>04_03_0118 - 11474060-11475298
Length = 412
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 62 RRYHRGLRSKCRRSCHPDE 6
R+YH R C SC+PDE
Sbjct: 304 RKYHAIFRKHCTPSCYPDE 322
>02_05_0310 + 27769988-27770830
Length = 280
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -2
Query: 520 PPSQC*RRVVPSAVGSPAPRTLSAGRTPPPRA 425
PP R V A PAPRT R P PRA
Sbjct: 246 PPPSSRREPVAPAARPPAPRTPPRHRHPSPRA 277
>03_02_0340 +
7635354-7635621,7635992-7636121,7636865-7636929,
7637255-7637529,7640204-7640441,7641095-7641228,
7641340-7641414,7641675-7641776,7642154-7642263,
7642334-7642430
Length = 497
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 429 RGGGVRPALRVRGAGEPTAEGTT 497
RGGGVR +RV GA E G T
Sbjct: 229 RGGGVRGGVRVDGACEAAVNGCT 251
>03_02_0178 + 6195402-6199158,6199438-6200003
Length = 1440
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -1
Query: 134 VCLILWHASCGSRRYLVHHS*GVARRYHRG-LRSKCRRSCHPDEL 3
VCL H CG R L+ +R Y L+ C HP E+
Sbjct: 1137 VCLHWCHTDCGLRHSLIRKGGSGSRAYSTNELQFHCAACGHPSEM 1181
>06_01_0337 -
2432823-2432933,2433280-2433373,2434079-2434170,
2434565-2434679,2435253-2435335,2435544-2435654,
2435884-2435971,2436004-2436326
Length = 338
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 11/52 (21%)
Frame = -2
Query: 529 TASPPSQC*-----RRVVPSAVGSPAPRT-----LSAGRTPPP-RAEFGTRE 407
T+SPP C RR++P+ +P+P L R+PPP RA+FG E
Sbjct: 3 TSSPPCACAAPLLRRRLLPAPPRAPSPAAPPRLRLPLRRSPPPARAKFGKFE 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,311,382
Number of Sequences: 37544
Number of extensions: 359382
Number of successful extensions: 1247
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -