Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_I06
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000195-5|AAC24265.2|  504|Caenorhabditis elegans Hypothetical ...    51   7e-07
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    33   0.19 
AF000195-6|AAO61435.1|  350|Caenorhabditis elegans Hypothetical ...    33   0.19 
U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U88314-7|AAF99887.2|  294|Caenorhabditis elegans Pharyngeal glan...    28   5.5  
U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U39999-7|AAY44012.1|  232|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z81120-2|CAB03344.2|  426|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z50028-4|CAL36519.1|  298|Caenorhabditis elegans Hypothetical pr...    27   9.5  
DQ365983-1|ABD14368.1|  298|Caenorhabditis elegans intraflagella...    27   9.5  

>AF000195-5|AAC24265.2|  504|Caenorhabditis elegans Hypothetical
           protein C32F10.8a protein.
          Length = 504

 Score = 50.8 bits (116), Expect = 7e-07
 Identities = 21/44 (47%), Positives = 28/44 (63%)
 Frame = +1

Query: 439 ECGLRSGYVELVNLQPRVRLAFSTARAVMQCPTVLGQCILDCVM 570
           ECG+R GYVE +NL P V + F    +   C TVLGQ ++D V+
Sbjct: 327 ECGMRGGYVEFLNLDPEVYVLFKKMISAKLCSTVLGQAVIDAVV 370


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
            W01F3.3 protein.
          Length = 2175

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 18/37 (48%), Positives = 20/37 (54%)
 Frame = -2

Query: 544  PTQWGTASPPSQC*RRVVPSAVGSPAPRTLSAGRTPP 434
            PT  G A PP+   RRV  + VG PAPRT  A    P
Sbjct: 1011 PTTVGQAQPPASSSRRV--TEVGPPAPRTTEAAPPAP 1045


>AF000195-6|AAO61435.1|  350|Caenorhabditis elegans Hypothetical
           protein C32F10.8b protein.
          Length = 350

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 439 ECGLRSGYVELVNLQPRV 492
           ECG+R GYVE +NL P V
Sbjct: 327 ECGMRGGYVEFLNLDPEV 344


>U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical
           protein F10E7.4 protein.
          Length = 819

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +2

Query: 113 HAKELDRQTVSYPWTAPKDLEGDVVFKVTIVKSYAVFWVGIESAPVKV 256
           HA    + +V   W AP+   G VVF+ +++++  +++   E   VK+
Sbjct: 125 HANLKSKTSVHMMWKAPEVSSGCVVFRASVIETKYIWFTEAEGLTVKL 172


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -2

Query: 523 SPPSQC*RRVVPSAVGSPAP---RTLSAGRTPPPR 428
           SPP+   RR  PSA  SP P   R  S  ++PP R
Sbjct: 340 SPPAPARRRRSPSASKSPPPAPKRAKSRSKSPPAR 374


>U88314-7|AAF99887.2|  294|Caenorhabditis elegans Pharyngeal gland
           toxin-relatedprotein 1 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = -1

Query: 572 FITQSKMHCPNTVGHCITALAVLKASRTLGCRFTSSTYPERRPHSAASC 426
           + T     CP T G C T+ +   +S T   R   +T     P  A+ C
Sbjct: 163 YYTLMTTQCPRTCGRCSTSSSTTSSSTTCADRVNPTTGVSDCPARASLC 211


>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 548 CPNTVGHCITALAVLKASRTLGCRFTSSTYP 456
           CP  + HCI   AV++ S  +  R TSS +P
Sbjct: 495 CPQDLTHCINKEAVMRNSNPIN-RRTSSAHP 524


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 562 NPKCIVPTQWGTASPPSQC*RRVVPSAVGSPAPRTLSAGRTP 437
           NP    PT  GT +P +      VP+  GSP  +T +    P
Sbjct: 503 NPTTATPTTVGTMTPSTGTTTVPVPTTTGSPTTQTTAPVTKP 544


>U39999-7|AAY44012.1|  232|Caenorhabditis elegans Hypothetical
           protein F41G3.20 protein.
          Length = 232

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 572 FITQSKMHCPNTVGHCITALAVLKASRTLGCRFT-SSTYPERRPHSAASC 426
           ++T  K  CP T G+C ++ A   +S +     T +ST     P  A+ C
Sbjct: 109 YLTLMKQQCPKTCGYCTSSSATTTSSSSTCIDLTNASTGVSDCPGMASYC 158


>Z81120-2|CAB03344.2|  426|Caenorhabditis elegans Hypothetical
           protein T12D8.4 protein.
          Length = 426

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 5   ARQGDKIVGTWTVSPDDTFSQPLNCGEPNNAVT 103
           +R+   +VG   ++ D   ++P  C E N+AVT
Sbjct: 142 SRKAFTVVGIEDINSDPKLNEPATCVESNHAVT 174


>Z50028-4|CAL36519.1|  298|Caenorhabditis elegans Hypothetical
           protein F46F6.4d protein.
          Length = 298

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 499 RVVPSAVGSPAPRTLS--AGRTPPPRAEFGTREN*SRV 392
           +V P  +GSP   T +    +TPPPRA  G+    SR+
Sbjct: 18  QVQPPPMGSPPAYTSADEGPKTPPPRASAGSNMRASRL 55


>DQ365983-1|ABD14368.1|  298|Caenorhabditis elegans intraflagellar
           transport proteinvariant c protein.
          Length = 298

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 499 RVVPSAVGSPAPRTLS--AGRTPPPRAEFGTREN*SRV 392
           +V P  +GSP   T +    +TPPPRA  G+    SR+
Sbjct: 18  QVQPPPMGSPPAYTSADEGPKTPPPRASAGSNMRASRL 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,269,464
Number of Sequences: 27780
Number of extensions: 275667
Number of successful extensions: 783
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)