Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_I05
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    27   2.1  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    27   2.1  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    25   8.7  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    25   8.7  

>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +2

Query: 62  EETKPFEMSDFYKYSTKFRQANTQKMTSQSSGLNTGFHKSPLDVPHYSQEHW-HGQSN 232
           + T P     FY  S   +  NT + + Q SG ++G    P     Y+  +  HG SN
Sbjct: 611 KSTSPIPARPFYAQSGSLQSLNTTQHSHQISGGHSGRMNVPYAKLSYTSHNGRHGGSN 668


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +3

Query: 477 FPINILSAYREPGIEKFLEY 536
           FP N+ ++YR PG++ +++Y
Sbjct: 735 FPENLGASYRTPGVQPYVDY 754


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 71  KPFEMSD--FYKYSTKFRQANTQKMTSQSSGLNTGFHK 178
           K FE+SD  F  YS +    N + + +  +GLN+GF +
Sbjct: 462 KIFEVSDVAFCDYSRERMTRNERHLCAIFAGLNSGFEQ 499


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 50  IPYREETKPFEMSDFYKYSTKF 115
           I Y  E +  E+SDFY ++T +
Sbjct: 286 IAYDTEDEQLELSDFYDFTTSY 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,303,226
Number of Sequences: 5004
Number of extensions: 44135
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)