Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_I03
(546 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 141 3e-34
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 141 3e-34
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 134 5e-32
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 134 5e-32
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 134 5e-32
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 59 2e-09
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 59 2e-09
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 56 2e-08
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 55 4e-08
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 54 7e-08
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 54 7e-08
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 54 7e-08
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 54 7e-08
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 54 7e-08
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 54 9e-08
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 50 8e-07
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 50 1e-06
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 49 2e-06
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 49 2e-06
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 49 2e-06
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 48 6e-06
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 47 1e-05
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 47 1e-05
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 45 4e-05
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 44 7e-05
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 44 7e-05
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 44 7e-05
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 44 9e-05
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 43 2e-04
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 43 2e-04
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 43 2e-04
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 42 3e-04
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 42 4e-04
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 40 0.001
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 40 0.001
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 40 0.002
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 39 0.003
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 39 0.003
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 39 0.003
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 37 0.008
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 37 0.008
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 37 0.008
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 37 0.008
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 37 0.008
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 37 0.008
AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical... 36 0.014
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 36 0.019
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 36 0.019
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 36 0.019
AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical ... 36 0.019
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 34 0.077
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 34 0.077
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 33 0.13
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 33 0.13
U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical p... 31 0.41
U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical p... 31 0.41
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 31 0.72
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 31 0.72
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 30 0.95
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 30 1.2
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z74031-14|CAD66220.1| 187|Caenorhabditis elegans Hypothetical p... 29 1.7
U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical pr... 29 2.2
AF067607-1|AAY86220.1| 342|Caenorhabditis elegans Hypothetical ... 27 8.8
AC006663-2|AAF39900.2| 603|Caenorhabditis elegans Hypothetical ... 27 8.8
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 141 bits (341), Expect = 3e-34
Identities = 66/83 (79%), Positives = 74/83 (89%), Gaps = 2/83 (2%)
Frame = +2
Query: 302 PPN--YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQP 475
PPN Y MASLY+GDLH D++EAMLFEKFS AGPVLSIRVCRD +R SLGYAYVNFQQP
Sbjct: 49 PPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQP 108
Query: 476 ADAERALDSMNFDIIKGRPIRIM 544
ADAERALD+MNF++I GRP+RIM
Sbjct: 109 ADAERALDTMNFEVIHGRPMRIM 131
Score = 47.6 bits (108), Expect = 6e-06
Identities = 25/77 (32%), Positives = 43/77 (55%)
Frame = +2
Query: 311 YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 490
Y +LYV ++ D+ + L + FSS G + S +V D RS G+ +V F++P +A
Sbjct: 340 YQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDE-NGRSKGFGFVCFEKPEEATA 398
Query: 491 ALDSMNFDIIKGRPIRI 541
A+ MN +I +P+ +
Sbjct: 399 AVTDMNSKMIGAKPLYV 415
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 141 bits (341), Expect = 3e-34
Identities = 66/83 (79%), Positives = 74/83 (89%), Gaps = 2/83 (2%)
Frame = +2
Query: 302 PPN--YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQP 475
PPN Y MASLY+GDLH D++EAMLFEKFS AGPVLSIRVCRD +R SLGYAYVNFQQP
Sbjct: 49 PPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQP 108
Query: 476 ADAERALDSMNFDIIKGRPIRIM 544
ADAERALD+MNF++I GRP+RIM
Sbjct: 109 ADAERALDTMNFEVIHGRPMRIM 131
Score = 47.6 bits (108), Expect = 6e-06
Identities = 25/77 (32%), Positives = 43/77 (55%)
Frame = +2
Query: 311 YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 490
Y +LYV ++ D+ + L + FSS G + S +V D RS G+ +V F++P +A
Sbjct: 340 YQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDE-NGRSKGFGFVCFEKPEEATA 398
Query: 491 ALDSMNFDIIKGRPIRI 541
A+ MN +I +P+ +
Sbjct: 399 AVTDMNSKMIGAKPLYV 415
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 134 bits (323), Expect = 5e-32
Identities = 60/79 (75%), Positives = 71/79 (89%)
Frame = +2
Query: 308 NYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAE 487
+Y MASLYVGDLH D+ E++LFEKFS+AGPVLSIRVCRD TR SLGYAYVNFQQPADAE
Sbjct: 28 SYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAE 87
Query: 488 RALDSMNFDIIKGRPIRIM 544
RA+D+MNF+ + G+P+RIM
Sbjct: 88 RAMDTMNFEALHGKPMRIM 106
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 134 bits (323), Expect = 5e-32
Identities = 60/79 (75%), Positives = 71/79 (89%)
Frame = +2
Query: 308 NYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAE 487
+Y MASLYVGDLH D+ E++LFEKFS+AGPVLSIRVCRD TR SLGYAYVNFQQPADAE
Sbjct: 28 SYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAE 87
Query: 488 RALDSMNFDIIKGRPIRIM 544
RA+D+MNF+ + G+P+RIM
Sbjct: 88 RAMDTMNFEALHGKPMRIM 106
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 134 bits (323), Expect = 5e-32
Identities = 60/79 (75%), Positives = 71/79 (89%)
Frame = +2
Query: 308 NYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAE 487
+Y MASLYVGDLH D+ E++LFEKFS+AGPVLSIRVCRD TR SLGYAYVNFQQPADAE
Sbjct: 28 SYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAE 87
Query: 488 RALDSMNFDIIKGRPIRIM 544
RA+D+MNF+ + G+P+RIM
Sbjct: 88 RAMDTMNFEALHGKPMRIM 106
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 59.3 bits (137), Expect = 2e-09
Identities = 25/74 (33%), Positives = 46/74 (62%)
Frame = +2
Query: 320 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 499
A++YVG L ++E++L+E AGPV+S+ + +D +T G+ +V F DA+ A+
Sbjct: 13 ATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIK 72
Query: 500 SMNFDIIKGRPIRI 541
+N + G+PI++
Sbjct: 73 ILNMIKLYGKPIKV 86
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/75 (30%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Frame = +2
Query: 320 ASLYVGDLHSDITEAMLFEKFSSAGPVLSI-RVCRDMITRRSLGYAYVNFQQPADAERAL 496
A+++VG+L ++ E +L++ FS+ G +L + ++ RD+ + S G+A++NF ++ AL
Sbjct: 100 ANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTAL 159
Query: 497 DSMNFDIIKGRPIRI 541
++MN + R I +
Sbjct: 160 EAMNGQFLCNRAITV 174
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 59.3 bits (137), Expect = 2e-09
Identities = 25/74 (33%), Positives = 46/74 (62%)
Frame = +2
Query: 320 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 499
A++YVG L ++E++L+E AGPV+S+ + +D +T G+ +V F DA+ A+
Sbjct: 23 ATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIK 82
Query: 500 SMNFDIIKGRPIRI 541
+N + G+PI++
Sbjct: 83 ILNMIKLYGKPIKV 96
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/75 (30%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Frame = +2
Query: 320 ASLYVGDLHSDITEAMLFEKFSSAGPVLSI-RVCRDMITRRSLGYAYVNFQQPADAERAL 496
A+++VG+L ++ E +L++ FS+ G +L + ++ RD+ + S G+A++NF ++ AL
Sbjct: 110 ANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTAL 169
Query: 497 DSMNFDIIKGRPIRI 541
++MN + R I +
Sbjct: 170 EAMNGQFLCNRAITV 184
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 56.0 bits (129), Expect = 2e-08
Identities = 27/73 (36%), Positives = 42/73 (57%)
Frame = +2
Query: 323 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 502
S+YVG+ TE L FSS G + ++R+ D T R G+A++ F + A+RA++
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 503 MNFDIIKGRPIRI 541
MN GRP+R+
Sbjct: 66 MNGAEFNGRPLRV 78
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 54.8 bits (126), Expect = 4e-08
Identities = 28/84 (33%), Positives = 44/84 (52%)
Frame = +2
Query: 290 MNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQ 469
MN P+ +LYVG D+TE +L F G V++I + D + + G+ +V F
Sbjct: 1 MNTNFPHNRKRTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFD 60
Query: 470 QPADAERALDSMNFDIIKGRPIRI 541
DA A+D+MN + G+ IR+
Sbjct: 61 MAEDAAMAIDNMNESELFGKTIRV 84
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 54.0 bits (124), Expect = 7e-08
Identities = 27/71 (38%), Positives = 41/71 (57%)
Frame = +2
Query: 326 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 505
++VGDL S++ L E F G V +V RD T +S GY +V++ + +AERA++ M
Sbjct: 24 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 83
Query: 506 NFDIIKGRPIR 538
N + R IR
Sbjct: 84 NGQWLGRRTIR 94
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 54.0 bits (124), Expect = 7e-08
Identities = 27/71 (38%), Positives = 41/71 (57%)
Frame = +2
Query: 326 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 505
++VGDL S++ L E F G V +V RD T +S GY +V++ + +AERA++ M
Sbjct: 34 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 93
Query: 506 NFDIIKGRPIR 538
N + R IR
Sbjct: 94 NGQWLGRRTIR 104
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 54.0 bits (124), Expect = 7e-08
Identities = 27/71 (38%), Positives = 41/71 (57%)
Frame = +2
Query: 326 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 505
++VGDL S++ L E F G V +V RD T +S GY +V++ + +AERA++ M
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 506 NFDIIKGRPIR 538
N + R IR
Sbjct: 197 NGQWLGRRTIR 207
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/73 (31%), Positives = 38/73 (52%)
Frame = +2
Query: 323 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 502
+LYVG+L S +TE + F+ G V +V D + YA+V F A +AL +
Sbjct: 47 TLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---GSNDPYAFVEFSDHGQASQALQT 103
Query: 503 MNFDIIKGRPIRI 541
MN ++ R +++
Sbjct: 104 MNKRLLLDREMKV 116
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 54.0 bits (124), Expect = 7e-08
Identities = 27/71 (38%), Positives = 41/71 (57%)
Frame = +2
Query: 326 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 505
++VGDL S++ L E F G V +V RD T +S GY +V++ + +AERA++ M
Sbjct: 105 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 164
Query: 506 NFDIIKGRPIR 538
N + R IR
Sbjct: 165 NGQWLGRRTIR 175
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 323 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRD 424
+LYVG+L S +TE + F+ G V +V D
Sbjct: 47 TLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD 80
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 54.0 bits (124), Expect = 7e-08
Identities = 28/71 (39%), Positives = 40/71 (56%)
Frame = +2
Query: 326 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 505
++VGDL S+I L E F G V ++ RD T + GY +V++ + DAERA+D M
Sbjct: 134 VFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEM 193
Query: 506 NFDIIKGRPIR 538
N + R IR
Sbjct: 194 NGAWLGRRTIR 204
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 53.6 bits (123), Expect = 9e-08
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = +2
Query: 326 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 505
++VGDL D++ +L F+ G V +V RD+ T++S GY +V+F +AE A+ M
Sbjct: 137 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 196
Query: 506 NFDIIKGRPIR 538
N I R +R
Sbjct: 197 NGKWIGKRAVR 207
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 50.4 bits (115), Expect = 8e-07
Identities = 25/73 (34%), Positives = 43/73 (58%)
Frame = +2
Query: 323 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 502
S++VG++ D++E + FS AG VLSI++ D T + GY ++ F AE A+ +
Sbjct: 19 SVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRN 78
Query: 503 MNFDIIKGRPIRI 541
+N + GR +R+
Sbjct: 79 LNGYELSGRILRV 91
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 49.6 bits (113), Expect = 1e-06
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = +2
Query: 323 SLYVGDLHSDITEAMLFEKFSSA-GPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 499
+++VG+L +ITE L FS+ GPV ++R+ RD T + G+A+VNF+Q + AL
Sbjct: 247 AIFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVSLAL- 305
Query: 500 SMNFDIIKGRPIRI 541
SM ++ R +RI
Sbjct: 306 SMETIKMEKRDLRI 319
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/75 (33%), Positives = 41/75 (54%)
Frame = +2
Query: 317 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 496
M+ +YVG + +I E ML F GP+ SI + D T +A+V ++ P A A
Sbjct: 101 MSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQ 160
Query: 497 DSMNFDIIKGRPIRI 541
+SMN ++ GR +++
Sbjct: 161 ESMNGQMLGGRNLKV 175
Score = 37.1 bits (82), Expect = 0.008
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = +2
Query: 326 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 505
+YV +H D++E L F + G ++ ++ R R G+ Y+ F A+ M
Sbjct: 209 VYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGM 268
Query: 506 NFDIIKGRPIR 538
N + G+ +R
Sbjct: 269 NMFDLGGQYLR 279
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/75 (33%), Positives = 41/75 (54%)
Frame = +2
Query: 317 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 496
M+ +YVG + +I E ML F GP+ SI + D T +A+V ++ P A A
Sbjct: 101 MSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQ 160
Query: 497 DSMNFDIIKGRPIRI 541
+SMN ++ GR +++
Sbjct: 161 ESMNGQMLGGRNLKV 175
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = +2
Query: 326 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 505
+YV +H D++E L F + G ++ ++ R R G+ Y+ F A+ M
Sbjct: 209 VYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGM 268
Query: 506 NFDIIKGRPIRI 541
N + G+ +R+
Sbjct: 269 NMFDLGGQYLRV 280
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/75 (33%), Positives = 41/75 (54%)
Frame = +2
Query: 317 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 496
M+ +YVG + +I E ML F GP+ SI + D T +A+V ++ P A A
Sbjct: 101 MSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQ 160
Query: 497 DSMNFDIIKGRPIRI 541
+SMN ++ GR +++
Sbjct: 161 ESMNGQMLGGRNLKV 175
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = +2
Query: 326 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 505
+YV +H D++E L F + G ++ ++ R R G+ Y+ F A+ M
Sbjct: 209 VYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGM 268
Query: 506 NFDIIKGRPIRI 541
N + G+ +R+
Sbjct: 269 NMFDLGGQYLRV 280
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 47.6 bits (108), Expect = 6e-06
Identities = 21/73 (28%), Positives = 47/73 (64%)
Frame = +2
Query: 326 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 505
L+V +L SD + +L++ FS G ++++++ RD+ T++ GYA+V+ +A A+ S+
Sbjct: 376 LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDL-TQQCKGYAFVSMSNYTEAYNAMLSL 434
Query: 506 NFDIIKGRPIRIM 544
N + G+ ++++
Sbjct: 435 NGTNLAGKTLQVV 447
Score = 47.2 bits (107), Expect = 8e-06
Identities = 23/73 (31%), Positives = 43/73 (58%)
Frame = +2
Query: 323 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 502
+L + L +T+ + F+S G + S ++ RD +T +SLGY +VN+ + DA RA+ S
Sbjct: 43 NLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSS 102
Query: 503 MNFDIIKGRPIRI 541
N ++ + I++
Sbjct: 103 FNGLRLQNKTIKV 115
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/75 (30%), Positives = 39/75 (52%)
Frame = +2
Query: 317 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 496
+ SL + +L T L F G + + + RD +R+S G+ +V F + DAE AL
Sbjct: 18 LTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHAL 77
Query: 497 DSMNFDIIKGRPIRI 541
D + ++ GR +R+
Sbjct: 78 DRTDGKLVDGRELRV 92
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/75 (30%), Positives = 39/75 (52%)
Frame = +2
Query: 317 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 496
+ SL + +L T L F G + + + RD +R+S G+ +V F + DAE AL
Sbjct: 18 LTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHAL 77
Query: 497 DSMNFDIIKGRPIRI 541
D + ++ GR +R+
Sbjct: 78 DRTDGKLVDGRELRV 92
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/72 (27%), Positives = 40/72 (55%)
Frame = +2
Query: 326 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 505
++ GDL +++++ +L + F +V R+ T +S GY +V+F+ D RA+ M
Sbjct: 205 VFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMREM 264
Query: 506 NFDIIKGRPIRI 541
+ + RPI++
Sbjct: 265 DGKYVGNRPIKL 276
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 44.0 bits (99), Expect = 7e-05
Identities = 24/66 (36%), Positives = 34/66 (51%)
Frame = +2
Query: 302 PPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 481
PP + L++G L D T+ L FS GPV+ V RD T+ S G+ +V F
Sbjct: 45 PPQ--LRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFS 102
Query: 482 AERALD 499
AE A++
Sbjct: 103 AESAMN 108
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 44.0 bits (99), Expect = 7e-05
Identities = 24/66 (36%), Positives = 34/66 (51%)
Frame = +2
Query: 302 PPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 481
PP + L++G L D T+ L FS GPV+ V RD T+ S G+ +V F
Sbjct: 65 PPQ--LRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFS 122
Query: 482 AERALD 499
AE A++
Sbjct: 123 AESAMN 128
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 44.0 bits (99), Expect = 7e-05
Identities = 24/66 (36%), Positives = 34/66 (51%)
Frame = +2
Query: 302 PPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 481
PP + L++G L D T+ L FS GPV+ V RD T+ S G+ +V F
Sbjct: 66 PPQ--LRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFS 123
Query: 482 AERALD 499
AE A++
Sbjct: 124 AESAMN 129
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 43.6 bits (98), Expect = 9e-05
Identities = 17/25 (68%), Positives = 23/25 (92%)
Frame = +2
Query: 470 QPADAERALDSMNFDIIKGRPIRIM 544
QPADAERA+D+MNF+ + G+P+RIM
Sbjct: 19 QPADAERAMDTMNFEALHGKPMRIM 43
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/73 (30%), Positives = 39/73 (53%)
Frame = +2
Query: 317 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 496
+ ++VG L S+ T+ ++ E +S G + I V RD T+RS G+ +V F + + A+
Sbjct: 22 LRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAM 81
Query: 497 DSMNFDIIKGRPI 535
II G+ +
Sbjct: 82 -KQRPHIIDGKTV 93
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/73 (30%), Positives = 39/73 (53%)
Frame = +2
Query: 317 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 496
+ ++VG L S+ T+ ++ E +S G + I V RD T+RS G+ +V F + + A+
Sbjct: 22 LRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAM 81
Query: 497 DSMNFDIIKGRPI 535
II G+ +
Sbjct: 82 -KQRPHIIDGKTV 93
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/73 (30%), Positives = 39/73 (53%)
Frame = +2
Query: 317 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 496
+ ++VG L S+ T+ ++ E +S G + I V RD T+RS G+ +V F + + A+
Sbjct: 22 LRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAM 81
Query: 497 DSMNFDIIKGRPI 535
II G+ +
Sbjct: 82 -KQRPHIIDGKTV 93
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 41.9 bits (94), Expect = 3e-04
Identities = 20/72 (27%), Positives = 39/72 (54%)
Frame = +2
Query: 326 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 505
++V ++H + TE + +KFS G + +I + D T GYA V ++ +A A+D
Sbjct: 57 VFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQS 116
Query: 506 NFDIIKGRPIRI 541
N + G+ +++
Sbjct: 117 NDTDLLGQNVKV 128
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/74 (29%), Positives = 40/74 (54%)
Frame = +2
Query: 320 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 499
A +Y+G L ++E + FS G V++I + RD T +S G+A++ ++ A+D
Sbjct: 38 AWIYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVD 97
Query: 500 SMNFDIIKGRPIRI 541
+ N + R IR+
Sbjct: 98 NFNGISLHKRMIRV 111
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = +2
Query: 326 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 505
L+V ++ E L F GPV+ + + + R S G+ +V Q P DA+RA
Sbjct: 102 LHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFN--ERGSKGFGFVTMQNPDDADRARAEF 159
Query: 506 NFDIIKGRPIRI 541
N I+GR + +
Sbjct: 160 NGTTIEGRRVEV 171
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = +2
Query: 326 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 505
L+V ++ E L F GPV+ + + + R S G+ +V Q P DA+RA
Sbjct: 102 LHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFN--ERGSKGFGFVTMQNPDDADRARAEF 159
Query: 506 NFDIIKGRPIRI 541
N I+GR + +
Sbjct: 160 NGTTIEGRRVEV 171
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/72 (33%), Positives = 34/72 (47%)
Frame = +2
Query: 326 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 505
++VG L ++ L E F G + V D T++S GY +V + A AERA
Sbjct: 37 IFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDP 96
Query: 506 NFDIIKGRPIRI 541
N II GR +
Sbjct: 97 N-PIIDGRKANV 107
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/50 (46%), Positives = 26/50 (52%)
Frame = +2
Query: 359 EAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSMN 508
E L F G VL IRV R+ T G+AYV F A AE A +SMN
Sbjct: 45 EKELLGYFRQFGNVLRIRVARNRRTGNHKGWAYVGFDNKAVAEIAAESMN 94
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 38.7 bits (86), Expect = 0.003
Identities = 24/80 (30%), Positives = 41/80 (51%)
Frame = +2
Query: 302 PPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 481
P N + V +LH I E M+ + F S G + I + D R + G+A + F+ D
Sbjct: 121 PGNKGPTHVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDS-NRENRGFATITFRNADD 179
Query: 482 AERALDSMNFDIIKGRPIRI 541
A+++ + +N + GR IR+
Sbjct: 180 AQKSCEQLNNFELAGRCIRL 199
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 38.7 bits (86), Expect = 0.003
Identities = 24/80 (30%), Positives = 41/80 (51%)
Frame = +2
Query: 302 PPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 481
P N + V +LH I E M+ + F S G + I + D R + G+A + F+ D
Sbjct: 266 PGNKGPTHVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDS-NRENRGFATITFRNADD 324
Query: 482 AERALDSMNFDIIKGRPIRI 541
A+++ + +N + GR IR+
Sbjct: 325 AQKSCEQLNNFELAGRCIRL 344
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 37.1 bits (82), Expect = 0.008
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +2
Query: 380 FSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSMNFDIIKGRPIRI 541
F GPV+ + + + R S G+ +V Q P DA+RA N I+GR + +
Sbjct: 2 FEKVGPVVDVEIIFN--ERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEV 53
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = +2
Query: 326 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 505
+++G L T L + F G V V RD T+R+ G+ ++ F P+ ++ L++
Sbjct: 47 MFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNR 106
Query: 506 NFDI 517
++
Sbjct: 107 EHEL 110
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 37.1 bits (82), Expect = 0.008
Identities = 25/74 (33%), Positives = 37/74 (50%)
Frame = +2
Query: 320 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 499
A +YVG L SD T L E F G R+ + + RR G+A+V + DAE A+
Sbjct: 3 AKVYVGGLPSDATSQELEEIFDRFG-----RIRKVWVARRPPGFAFVEYDDVRDAEDAVR 57
Query: 500 SMNFDIIKGRPIRI 541
+++ I G R+
Sbjct: 58 ALDGSRICGVRARV 71
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 37.1 bits (82), Expect = 0.008
Identities = 25/74 (33%), Positives = 37/74 (50%)
Frame = +2
Query: 320 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 499
A +YVG L SD T L E F G R+ + + RR G+A+V + DAE A+
Sbjct: 3 AKVYVGGLPSDATSQELEEIFDRFG-----RIRKVWVARRPPGFAFVEYDDVRDAEDAVR 57
Query: 500 SMNFDIIKGRPIRI 541
+++ I G R+
Sbjct: 58 ALDGSRICGVRARV 71
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 37.1 bits (82), Expect = 0.008
Identities = 25/74 (33%), Positives = 37/74 (50%)
Frame = +2
Query: 320 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 499
A +YVG L SD T L E F G R+ + + RR G+A+V + DAE A+
Sbjct: 3 AKVYVGGLPSDATSQELEEIFDRFG-----RIRKVWVARRPPGFAFVEYDDVRDAEDAVR 57
Query: 500 SMNFDIIKGRPIRI 541
+++ I G R+
Sbjct: 58 ALDGSRICGVRARV 71
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = +2
Query: 326 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 505
+++G L T L + F G V V RD T+R+ G+ ++ F P+ ++ L++
Sbjct: 47 MFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNR 106
Query: 506 NFDI 517
++
Sbjct: 107 EHEL 110
>AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical
protein Y37D8A.21 protein.
Length = 282
Score = 36.3 bits (80), Expect = 0.014
Identities = 22/74 (29%), Positives = 37/74 (50%)
Frame = +2
Query: 287 KMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNF 466
K P PP ++YV + ++ E +L E F AGPV+ + + RD + + +A V F
Sbjct: 4 KPTPSPPEE--RTIYVANFSEEVDEELLEELFIQAGPVVKV-ILRD-VRDSNAKFALVEF 59
Query: 467 QQPADAERALDSMN 508
+ A++ MN
Sbjct: 60 EDELSVLFAIELMN 73
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 35.9 bits (79), Expect = 0.019
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +2
Query: 368 LFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSMNFDIIKGRPIRI 541
+FEKF G V + + + R S G+ +V ++P DAERA ++ +I+GR I +
Sbjct: 172 MFEKF---GVVSDVEIIFN--ERGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEV 224
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 35.9 bits (79), Expect = 0.019
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +2
Query: 368 LFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSMNFDIIKGRPIRI 541
+FEKF G V + + + R S G+ +V ++P DAERA ++ +I+GR I +
Sbjct: 172 MFEKF---GVVSDVEIIFN--ERGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEV 224
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 35.9 bits (79), Expect = 0.019
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = +2
Query: 350 DITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSMNFDIIKGR 529
D E + E G V I VC + I +G YV F + DAE+A + +N G+
Sbjct: 89 DFYEEVFVEMERKYGEVEEINVCEN-IGEHMVGNVYVKFMKEEDAEKAKNDLNNRWFNGQ 147
Query: 530 PI 535
PI
Sbjct: 148 PI 149
>AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical
protein C07H6.4 protein.
Length = 933
Score = 35.9 bits (79), Expect = 0.019
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +2
Query: 323 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVC---RDMITRRSLGYAYVNFQQPADAERA 493
++YV ++ +TE L F S GP+ ++++ + RR A+V F AD +R
Sbjct: 201 NVYVSNIPHSVTEDDLLFTFGSFGPLAALKILYPRSEEERRRPHICAFVAFMSRADVDRF 260
Query: 494 LDSMNFDIIKGRPIR 538
+ + I++ PIR
Sbjct: 261 MAEVRVIIVRNEPIR 275
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 33.9 bits (74), Expect = 0.077
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +2
Query: 326 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAE---RAL 496
+YVG+L D+ E + + F G + + D+ + R +A+V F+ DAE RA
Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYV----DIKSGRGPAFAFVEFEDHRDAEDAVRAR 66
Query: 497 DSMNFDIIKGRPIRI 541
D FD GR IR+
Sbjct: 67 DGYEFD---GRRIRV 78
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 33.9 bits (74), Expect = 0.077
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +2
Query: 326 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAE---RAL 496
+YVG+L D+ E + + F G + + D+ + R +A+V F+ DAE RA
Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYV----DIKSGRGPAFAFVEFEDHRDAEDAVRAR 66
Query: 497 DSMNFDIIKGRPIRI 541
D FD GR IR+
Sbjct: 67 DGYEFD---GRRIRV 78
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 33.1 bits (72), Expect = 0.13
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +2
Query: 326 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 505
++VG + ++ L F+ G V +V D RS G+A+V F + AL +
Sbjct: 31 IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAR 90
Query: 506 NFDIIKGRPIRI 541
IKG+ + +
Sbjct: 91 E-QTIKGKSVEV 101
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 33.1 bits (72), Expect = 0.13
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +2
Query: 326 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 505
++VG + ++ L F+ G V +V D RS G+A+V F + AL +
Sbjct: 31 IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAR 90
Query: 506 NFDIIKGRPIRI 541
IKG+ + +
Sbjct: 91 E-QTIKGKSVEV 101
>U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical
protein C44B7.2b protein.
Length = 339
Score = 31.5 bits (68), Expect = 0.41
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 293 NPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPV 400
+P PN P ++V +LH +TEA L E S+ GPV
Sbjct: 24 DPTNPN-PSIVVHVRNLHQKVTEADLLEALSNFGPV 58
>U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical
protein C44B7.2a protein.
Length = 597
Score = 31.5 bits (68), Expect = 0.41
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 293 NPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPV 400
+P PN P ++V +LH +TEA L E S+ GPV
Sbjct: 24 DPTNPN-PSIVVHVRNLHQKVTEADLLEALSNFGPV 58
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 30.7 bits (66), Expect = 0.72
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = +2
Query: 302 PPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 481
P ++ +YV ++ E L F + G VLS+ + + R S G+ +V
Sbjct: 45 PASFTDNRIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTN--DRGSKGFGFVTLDSIES 102
Query: 482 AERALDSMNFDIIKGRPIRI 541
E+A +++ ++GR I +
Sbjct: 103 CEKARAALHESHVQGRIIEV 122
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 30.7 bits (66), Expect = 0.72
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = +2
Query: 302 PPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 481
P ++ +YV ++ E L F + G VLS+ + + R S G+ +V
Sbjct: 45 PASFTDNRIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTN--DRGSKGFGFVTLDSIES 102
Query: 482 AERALDSMNFDIIKGRPIRI 541
E+A +++ ++GR I +
Sbjct: 103 CEKARAALHESHVQGRIIEV 122
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 30.3 bits (65), Expect = 0.95
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 314 PMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRR-SLGYAYVNFQQPADAER 490
P + + +L ++ + L E FS G + ++ + D GY YV + DAE+
Sbjct: 131 PAKRVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEK 190
Query: 491 ALDSMNFDIIKGRPIRI 541
++ M+ I G + +
Sbjct: 191 SIKHMDGGQIDGMAVHV 207
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +2
Query: 326 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 505
LY+ +L IT ++E F G V IRV TR G A+V ++ DA+ A + +
Sbjct: 21 LYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETR---GTAFVVYEDIFDAKTACEHL 77
Query: 506 N 508
+
Sbjct: 78 S 78
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +2
Query: 380 FSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSMNFDIIKGRPIRIM 544
F G V ++V D T G+A V F P A A +++ + KGR + I+
Sbjct: 299 FKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALDGYVFKGRMMHIL 353
>Z74031-14|CAD66220.1| 187|Caenorhabditis elegans Hypothetical
protein F32D8.13 protein.
Length = 187
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +2
Query: 347 SDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSMNFDII 520
SD +E FS+ ++IR+ R+ GY +V A++E LD F+++
Sbjct: 103 SDCRRRTDYEYFSANYRTVTIRIETSEEDRKQRGYQFVEGVDDAESECGLDDYKFNLV 160
>U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical
protein C18A3.5c protein.
Length = 103
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 323 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQ 469
+LYVG+L S +TE + F+ G V +V D LGY N Q
Sbjct: 47 TLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----ELGYLATNAQ 90
>AF067607-1|AAY86220.1| 342|Caenorhabditis elegans Hypothetical
protein C18H7.10 protein.
Length = 342
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 309 ITRWRLYMSEIYTRTSQRPCCL 374
+ W L+ S + TR S R CCL
Sbjct: 176 VVHWMLFRSLLRTRKSTRVCCL 197
>AC006663-2|AAF39900.2| 603|Caenorhabditis elegans Hypothetical
protein H24K24.4 protein.
Length = 603
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 434 RRSLGYAYVNFQQPADAERALD 499
R YAYV F+ P DA++A++
Sbjct: 60 RHMSDYAYVTFETPEDAQKAIN 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,255,018
Number of Sequences: 27780
Number of extensions: 182316
Number of successful extensions: 544
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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