Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_I02
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.77 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.77 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.0  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    24   1.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.5  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +2

Query: 125 YPR-IRLHRKPHHHHTPSPQAKPQ*SLVIQ 211
           YP  I++   PHHH  P     PQ   ++Q
Sbjct: 453 YPAAIQIGHTPHHHPHPPETPGPQVETILQ 482



 Score = 23.4 bits (48), Expect = 1.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 140 LHRKPHHHHT 169
           +H  PHHHH+
Sbjct: 426 IHATPHHHHS 435


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 143 HRKPHHHHTPSPQAKPQ 193
           H++ HHH +  PQA+ Q
Sbjct: 811 HQQLHHHQSTHPQAQAQ 827


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 264 PPGSSRGQDRRQVDHQFERPSGTTCRLRRTRQHRDSQRAPP 386
           PP SS G D  ++D  F+  +     L   R  + +   PP
Sbjct: 346 PPPSSSGPDSAKLDKIFDIATKENAMLLSGRSQKSTTGPPP 386


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 192 SEAW*FNSSDYQEHGTVRKNEK 257
           SE W + S   +EHG  +K  K
Sbjct: 196 SELWVYKSKASEEHGNKKKKNK 217


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = +3

Query: 114 YEHDTPASGSTASLTTTIHHHPKQSHSEA 200
           YE  T    S    +   H  P Q+HS A
Sbjct: 614 YEEPTVGEISQDGSSPHFHQSPSQNHSSA 642


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +3

Query: 534 LIGFNFYVCLVCLYII 581
           LIG++ ++C+  +YII
Sbjct: 396 LIGWSAFLCISLVYII 411


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 557 VFGLSIYHFIYLKQIN 604
           VFGLS++H I + + N
Sbjct: 34  VFGLSLHHIIDVDEKN 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,426
Number of Sequences: 438
Number of extensions: 3479
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)