Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_H24
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0447 + 17688248-17688319,17688414-17688515,17688852-176889... 38 0.009
05_02_0089 + 6498081-6498395 32 0.33
11_08_0083 + 28256844-28258760 31 0.58
08_02_1180 + 24980042-24980784,24980874-24981168,24981650-249818... 29 4.1
01_06_1457 + 37508187-37508421,37509012-37509109,37509791-375099... 29 4.1
11_05_0021 - 18438030-18438086,18438120-18438397,18438660-18438846 28 7.2
03_01_0451 + 3461229-3461561,3462043-3462290,3462425-3462716,346... 28 7.2
08_02_0772 + 21035762-21037567 27 9.5
08_01_0901 - 8873905-8874076,8874674-8874786,8875388-8875522,887... 27 9.5
>09_04_0447 +
17688248-17688319,17688414-17688515,17688852-17688981,
17689198-17689290,17689363-17689451,17689889-17689969,
17690118-17690207,17690653-17690772,17690877-17690927,
17691125-17691171,17691321-17691378,17691451-17691507
Length = 329
Score = 37.5 bits (83), Expect = 0.009
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Frame = +1
Query: 31 IAKKCEMIPIEWVTRRLATGS-----FLKRNPGV----SEGFRFTPPKQETFYKDDANHD 183
IAK+C + P+E+V R TGS + N G R K + +
Sbjct: 89 IAKRCSVFPVEFVVRGYVTGSTDTSLWTVYNKGARNYCGNVLRDGMVKNQKLSANILTPT 148
Query: 184 PQWSEEQI-VSAQFKFNGLTIGQDEVDYMRKATILVFEVLEKAWALRDCALIDMKIEFGV 360
+ ++ + V+ + N + +++ D R + +F ++ L+D K EFG
Sbjct: 149 TKAADHDVPVTPEEIINSGLMSKEDFDEARSKALSLFAYGQEVALENGLILVDTKYEFGK 208
Query: 361 DADGNILLAD 390
ADG I+L D
Sbjct: 209 TADGTIMLID 218
>05_02_0089 + 6498081-6498395
Length = 104
Score = 32.3 bits (70), Expect = 0.33
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 413 LQESESITSAKRMLPSASTPNSIFMSMSAQSRSAHAFSNTSNTRIVAFL 267
LQ SES+ A RM+P+ P + S+ + +A + S+TS + F+
Sbjct: 17 LQSSESLVQAARMMPAGDRPQAPVARTSSATDTAASSSSTSQDLLQEFM 65
>11_08_0083 + 28256844-28258760
Length = 638
Score = 31.5 bits (68), Expect = 0.58
Identities = 24/66 (36%), Positives = 32/66 (48%)
Frame = +1
Query: 58 IEWVTRRLATGSFLKRNPGVSEGFRFTPPKQETFYKDDANHDPQWSEEQIVSAQFKFNGL 237
IE RRL S R GV FR K ET ++D + DP+ EE+++ +GL
Sbjct: 413 IEETGRRL---SICARQFGVPFKFRAIAAKWETVRREDLHLDPEEEEEEVLVVNC-LHGL 468
Query: 238 TIGQDE 255
QDE
Sbjct: 469 NTLQDE 474
>08_02_1180 +
24980042-24980784,24980874-24981168,24981650-24981823,
24981999-24982187,24982290-24982403,24982517-24982837,
24983485-24983542,24984216-24984337
Length = 671
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 120 GNAWISLQEGASSEASRYPFYRDHFTFLRY 31
G+A + Q G S E +RY F R+ TFL +
Sbjct: 590 GSAHFTAQRGVSMENARYTFLRECTTFLAH 619
>01_06_1457 +
37508187-37508421,37509012-37509109,37509791-37509904,
37510361-37510426,37510659-37510745,37510902-37511012
Length = 236
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 129 KAFGNAWISLQEGASSEASRYPFYRDHFT 43
KAFG++W + + A+ A ++PF D T
Sbjct: 118 KAFGDSWKAATKDATDAAQQWPFLTDALT 146
>11_05_0021 - 18438030-18438086,18438120-18438397,18438660-18438846
Length = 173
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 347 SNSASMPMVTSSWLT*SIRIPGGSGHQ 427
+NSAS + T T +R+ GGSGHQ
Sbjct: 53 ANSASASIPTGRGRTHPLRLDGGSGHQ 79
>03_01_0451 +
3461229-3461561,3462043-3462290,3462425-3462716,
3463057-3463209,3463288-3463674
Length = 470
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 514 FAWVREQLDHLKPAVHHKVVIFMGSPADQEHSXKIAKAARD 636
F+W+R+ K A+HH ++F A E + +A D
Sbjct: 204 FSWIRKLPAETKTAIHHSKILFCNGYAFDELFPDVISSAID 244
>08_02_0772 + 21035762-21037567
Length = 601
Score = 27.5 bits (58), Expect = 9.5
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = -1
Query: 527 LTQAKLRLTVSRSAAVTVVKFL*TCLSTIRRLSPDGQSLQ-ESESITSAKRMLPSASTPN 351
LT+A L S +AA LS+ L P + LQ + + + +LP A T
Sbjct: 5 LTRALLSSPPSSAAAAATASAAAALLSSTSPL-PAARFLQLHAHLLRTGLLLLPLAPTAA 63
Query: 350 SIFMSMSAQSRSAH 309
S F+S++A S +H
Sbjct: 64 SAFLSLAAASLPSH 77
>08_01_0901 -
8873905-8874076,8874674-8874786,8875388-8875522,
8875661-8875792,8876136-8876301,8877154-8877248,
8878983-8879104,8879283-8879403,8879556-8879633,
8879730-8879991,8880196-8880366,8881070-8881710
Length = 735
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +1
Query: 382 LADVIDSDSWRLWPSGDKRLMVDKQVYRNLTTVTAADLDTVKRNFAWVREQLDHLKPAVH 561
L ++ S+ P G + Q Y++ +T + DLD +K W ++HL +
Sbjct: 597 LTALLHGHSYTAHPMGCTAAVKAIQWYKDPSTNSNIDLDRMKLKELWDSALVNHLSSLPN 656
Query: 562 HKVVIFMGS 588
K V+ +G+
Sbjct: 657 VKRVVSLGT 665
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,446,042
Number of Sequences: 37544
Number of extensions: 398887
Number of successful extensions: 1016
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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