Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_H24
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39848-3|AAA80690.1|  423|Caenorhabditis elegans Hypothetical pr...   241   3e-64
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    29   2.8  
U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical pr...    29   3.7  

>U39848-3|AAA80690.1|  423|Caenorhabditis elegans Hypothetical
           protein B0286.3 protein.
          Length = 423

 Score =  241 bits (590), Expect = 3e-64
 Identities = 118/212 (55%), Positives = 147/212 (69%), Gaps = 1/212 (0%)
 Frame = +1

Query: 1   FQKIASPTAFIAKKCEMIPIEWVTRRLATGSFLKRNPGVSEGFRFTPPKQETFYKDDANH 180
           F+K  S T F+A+KC MIPIEWV RR+ATGSFLKRNPGV EGFRF   K ETF+KDDAN 
Sbjct: 81  FEKSISETEFVARKCTMIPIEWVARRVATGSFLKRNPGVKEGFRFNDLKLETFFKDDAND 140

Query: 181 DPQWSEEQIVSAQFKFNGLTIGQDEVDYMRKATILVFEVLEKAWALRDCALIDMKIEFGV 360
           DPQW++EQIVS     + L IG++E+  M+K T LVF  LEK WAL + ALIDMKIEFGV
Sbjct: 141 DPQWTDEQIVSNGLMIDHLKIGREEISLMKKMTKLVFRALEKGWALSNSALIDMKIEFGV 200

Query: 361 DADGNILLADVIDSDSWRLWPSGDKRLMVDKQVYRNLTTVTAADLDTVKRNFAWVRE-QL 537
             +G ILLADVID+DSWR+WP  D+RL +DKQVYR++  VT   L  V +N+  V +   
Sbjct: 201 TVEGEILLADVIDNDSWRVWPENDRRLQLDKQVYRDMKEVTEEGLALVLKNYTKVMDITA 260

Query: 538 DHLKPAVHHKVVIFMGSPADQEHSXKIAKAAR 633
              K      V++ MGS +D   + KI+  A+
Sbjct: 261 TFSKHQQKCHVLVIMGSGSDGVFARKISDEAK 292


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +1

Query: 388  DVIDSDSWRLWPSGDKRLMVDKQVYRNLTTVTAADLDTVKRNF---AWVREQLDHLKPAV 558
            ++   D W LWP  D R +V  ++   L+ + A DL TV++     A ++E  +H    +
Sbjct: 1861 EIYIEDGWNLWPD-DVRTVVGSKMSSELSRIVARDL-TVEQQLHLAALLQENGEHFSMDL 1918

Query: 559  HHKVV 573
              K+V
Sbjct: 1919 ALKLV 1923


>U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical
           protein K08B12.2a protein.
          Length = 449

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 4   QKIASPTAFIAKKCEMIPIEWVTRRLATGSFLKRNPGVSE 123
           Q + +P    A    M P E + R+L+ G  +  NP VS+
Sbjct: 312 QMLMTPQVTTASSTGMFPFEDIDRKLSNGDSMLINPAVSQ 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,931,084
Number of Sequences: 27780
Number of extensions: 319524
Number of successful extensions: 891
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)